Gene detail

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Gene detail information of Glyur002421s00038665.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15440.1	0	periodic tryptophan protein 2
NR	XP_003623841.1	0	Periodic tryptophan protein-like protein [Medicago truncatula]
COG	YP_001865069.1	3.00E-28	hypothetical protein Npun_F1419 [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	5.00E-18	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|A2Q5D0\|A2Q5D0_MEDTR	0	Periodic tryptophan protein-associated region; WD40-like {ECO:0000313\|EMBL:ABN08830.1}

Sequence

Transcript Sequence

>Glyur002421s00038665.1
ATGAACTTCAAGTTCCAGAACCTTCTGGGAGCTCCCTACAGGGGTGGAAACGCCGTCATCTCCAACAACACCCTGCTACTCTCACCCGTCGGTAACCGAGTTTCCGTCACAGACCTCCGCAAATCGGAGTCCACAACCCTCCCCATCCAATCCTCCTCCAACATCTNCCGCATCGCCGTCTCCCCCGACGGCACGTTCCTCCTCACCGTCGACGACCGCAANCGCTGCCAATTCATCAACCTCCGCCGCCGCACCCTCCTCCACCGCATCACCTTCAAGCACCGTGTCGCCGCCGCCAGGTTCTCCCCCGACGGATCCCTCATTGCCGTCGCCGCCGGTAAGCTCGTCCAAATCTGGCGCTCACCGGCGTTTCGCAGGGAGTATTTCCCCTTCGAATTGGTCCGAACCTTNGCCGATTTTGACGCCAAAGTCACTGCCTTCGATTGGAGCCCTGATTCCACCTACCTCCTTGCAGCGTCCAAGGACCTCACCGCTAGAATCTTGTGCTTGAAGAAACCAAATGACGGTGTTGTGAAGTACAAGCCTTTTCTGTTTTTAGGTCACAGGGATTCGGTTATTGGTTCCTTTTTTGGTGTTGATTCTAAAACTAATAGGGTTTGTAAGGCTTATACGGTTACTAGGGATTGTTATTTGTTTAGCTGGGGTTTTTCACCNGATGAGGGTTCGGCGCCACCATCGCCGGGGACGCCGGATAGGGACATGGAAGAAGGGGTTTTTGGTGATGTGAGGAAGAGGAAGGAATGTGAAATTGAGGATGAGNAAGGGTACTTGAGTAGAGGGAAGTGGGAGTTGTTGAGGAAGGACTGTTTTAATCAGGCGCCGGCGAGGGTAGCGGCGTGTGATTATCACAGAGGGCTGGACATGGTGGTGGTTGGGTTTTCAAATGGNGTGTTTGGGTTGTATCAGATGCCGGAGTTTGTGTGCATTCACTTGTTGTCTATATCGAGGGAGAAGATCACCACTGCCTTGTTTAATGATCTTGGGAATTGGTTGACCTTTGGCTGTGCCAAACTGGGCCAGCTCCTCGTGTGGGAGTGGCGGTCCGAGAGCTATATCTTGAAGCAGCAGGGTCATTACTTTGACGTTTGGACGGTTTCCTCNGGCTTTTGCTTTGTTACATTTTCTGAGCACACTAATGCCGTTACNGCTCTGCATTTTATGGCAAGTAACAATTGCCTGCTTAGTGCATCTCTTGATGGGACTGTTCGTGCATGGGATTTGTTACGTTATCGGAATTTTAGGACGTTTACAACCCCTTCTTCAAGACAGTTTGTTTCTTTGGCTGCCGATCAAAGTGGTGAAGTGATATGTGCGGGCACTTCAGATTCCTTTGAGATTTTTGTTTGGTCGATGAGAACTGGCCGTTTGTTGGATGTGCTCAGTGGTCATGAAGCCCCTGTTCATGGACTAACGTTTTCTCCTACAAATGCTATCTTGGCTTCATCATCATGGGACAAAACTGTTAGGTTGTGGGATGTCTTTGATGGAAAGGGAGCAGTTGAAACACTTATTCACACGCATGATGTTCTCACAGTAGTTTATCGTCCAGATGGAAGGCAGTTAGCTTGCAGCACATTAGATGGGCAAATTCATTTTTGGGATCCAATTGATGGTTTGCTGATGTACACCATAGAAGGTTCTAGAGATATTGCTGGAGGTCGTCTTATGACTGACCGTAGATCAGCTTCTAACTCAAGTTCAGGGAAGTGCTTCACAACCTTGTGTTATTCAGCTGATGGAAGCTACATATTAGCTGGGGGCNGTAGCAGATATATCTGCATGTATGATGTTGCAGATCAGGTATTGCTGCGACGTTTTCAGATAACTCATAATCTTTCATTAGATGGAGTACTTGANTTTTTAAACTCAAAGAATATGACAGAAGCTGGACCACTAGATTTGATTGATGATGATAACAGTGACATTGAAGAAGGTGTTGAAAAACAAACACGAGGGAAATTAGGACTAGATTTACCGGGATCAATGCTTAACCGTGGAAGACCTGTTATTCAAACAAAATGCCTTAGAATTGCACCTACAGGGAGGAGTTTTGTAGCAGCAACAACTGAGGGAGTTCTAGTTTATTCTGTCGATGAGTCCTTCATATTTGATCCAACTGACCTAGACATAGATGTTACACCAGAGGCTGTTGATGAAGCTCTTAATGAGAATCAACCAAGTAGGGCTTTGATCCTTAGCCTTCGCTTAAATGAGGACTCTTACATTAAAAAATGTATTTTTGCCGTTAGTCCAGCNGATATTCCAGCAGTTGCCACATCAATCCCTTACAGATATCTCCAGCGATTAATTGAGGCACTTGCAGCTCTTCTAGAAAACTGCCCGCATTTGGAATTTATACTTCGATGGTGTCAGGAGCTCTGTAAAGTCCATGGGAATTCTATTCAGCAGAACTCTAGAAATCTGCTCCCATCATTAAAATCTTTGCAGAAAGCAATCACTACTATGCATCACGATCTGGCTGATACATGCTCTTCCAATGAATATATGCTGCGATATTTATGCTCTTCTGGTGGCAAGAAATAGATGATTAACAACTCAAGAGTTGGGTTTTAGTAGCTTTGCTCAAGAAACCTTGTCCAACCTGATTGTGTTTTTTGAATATGGTACCTGCTGAGCATCACTGGCTTGTAGCAAGATCTGAGGTATCATAGTCGCATGGCACACCAACTTTGTAGCATCCTGCANAGGAATTCATCAATTTTTGTTCCTTGAAGCTTCTGTCAGATTTGTTTCACGGCCTGATGTCGATAGTTACGCACTACAATGACATTCTTGGTAATGCAGTGGTTGCTGTAGATTGCAGAGGTTGAAGTTCCTGCTTCATATATCCAGTAGTGTGTTTCGAATCAAATATTTTAGGAATTATTTGATGAAAAATGTTAGAGCCACAGTTTTTATGTC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02421	28759	36368	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002421s00038665.1	PF00400.27	WD40	141	167	0.0053
Glyur002421s00038665.1	PF00400.27	WD40	377	413	1.30E-07
Glyur002421s00038665.1	PF00400.27	WD40	463	499	3.50E-10
Glyur002421s00038665.1	PF00400.27	WD40	512	541	0.0015
Glyur002421s00038665.1	PF04003.7	Utp12	744	849	6.00E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.266
SRR1783600	control	10.162
SRR1783602	moderate drought stress	9.554
SRR1811619	moderate drought stress	9.532

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.544
DRR006520	Root Summer glycyrrhizin high producing strain	10.662
DRR006521	Root Winter glycyrrhizin high producing strain	12.180
DRR006522	Root Winter glycyrrhizin high producing strain	11.922
DRR006523	Root Summer glycyrrhizin low producing strain	10.762
DRR006524	Root Summer glycyrrhizin low producing strain	11.111
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.345
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.150

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	16.560
SRR2868004	Drought Stress(Tissue:root)	11.865
SRR2967015	Control (Tissue:root)	10.543

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	4.680
SRR9715740	Leave	8.701
SRR9715741	Leave	4.579
SRR9715739	Root	4.892
SRR9715742	Root	11.985
SRR9715743	Root	11.367

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.536
SRR8749028	MeJA induced 9h	16.350
SRR8749029	MeJA induced 9h	14.370
SRR8749030	Uninduced	2.174
SRR8749031	Uninduced	1.941
SRR8749032	Uninduced	3.507

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	11.143
SRR8400027	Control-Root	10.566