Gene detail information of Glyur002430s00039737.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G39800.40delta1-pyrroline-5-carboxylate synthase 1
NRKHN05644.10Delta-1-pyrroline-5-carboxylate synthase [Glycine soja]
COGYP_003890616.12.00E-109gamma-glutamyl phosphate reductase [Cyanothece sp. PCC 7822]
Swissprottr|O04226|P5CS_ORYSJ0Gamma-glutamyl phosphate reductase
trEMBLtr|I1JLN5|I1JLN5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G12240.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold024301266321448-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12657ALDH18A1, P5CS EC:2.7.2.11 1.2.1.41 Biosynthesis of amino acids map01230
Arginine and proline metabolismmap00330


Gene Ontology

biological_process

GO:0006561  proline biosynthetic process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0004349  glutamate 5-kinase activity

GO:0004350  glutamate-5-semialdehyde dehydrogenase activity

GO:0016491  oxidoreductase activity

GO:0016620  oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002430s00039737.1PF00696.23AA_kinase72793.70E-26
Glyur002430s00039737.1PF00171.17Aldedh3125402.00E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control53.486
SRR1783600control53.454
SRR1783602moderate drought stress91.963
SRR1811619moderate drought stress91.371

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain84.288
DRR006520Root Summer glycyrrhizin high producing strain83.381
DRR006521Root Winter glycyrrhizin high producing strain397.818
DRR006522Root Winter glycyrrhizin high producing strain388.838
DRR006523Root Summer glycyrrhizin low producing strain58.744
DRR006524Root Summer glycyrrhizin low producing strain59.095
DRR006525Leaf Summer glycyrrhizin high producing strain20.345
DRR006526Leaf Summer glycyrrhizin high producing strain19.823

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)52.628
SRR2868004Drought Stress(Tissue:root)20.333
SRR2967015Control (Tissue:root)23.470

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave32.651
SRR9715740Leave48.973
SRR9715741Leave20.728
SRR9715739Root53.330
SRR9715742Root234.039
SRR9715743Root203.254

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.242
SRR8749028MeJA induced 9h60.514
SRR8749029MeJA induced 9h12.705
SRR8749030Uninduced6.528
SRR8749031Uninduced1.009
SRR8749032Uninduced2.517

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root145.246
SRR8400027Control-Root71.737

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved