Gene detail

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Gene detail information of Glyur002442s00040627.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G36570.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_004497593.1	0	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400-like [Cicer arietinum]
COG	YP_001958461.1	9.00E-18	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9M9C5\|Y1680_ARATH	2.00E-158	Probable leucine-rich repeat receptor-like protein kinase At1g68400 (Precursor)
trEMBL	tr\|V7BH82\|V7BH82_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW17259.1}

Sequence

Transcript Sequence

>Glyur002442s00040627.1
ATGGCTAACAACAACATGAACCATTGTTTCCTCTTCCTCTGCCTCTTACCGTGTCTGACTCAGACACAGAGTCTCCTCCATCATCATAACAATAATAATGACACGTATGCACTCACCCTCTTCCGCCGCCAAACCGACGCACACGGCCGCCTACTCTCCAACTGGACCGGCGGCGACGCCTGCTTCGCTGCATGGCACGGCGTTGTTTGCTCCCCAAACGGACGCGTCACGGCTCTCACCCTTCCTTCCCTCAACCTACGAGGACCCATCGACGCACTATCTCCCCTAACCCATCTCCGCCTCCTCGACCTCCACAACAACCGCCTCAACGGTACTGTCTCCCCTTCTCTCCTCTCCAATTGCACCAACCTCAGGCTACTCTACCTCGCCGACAATGACTTCTCCGGCCAGATCCCACCGGAGATATCCTCCCCCAAAAACCTCGTCCGCCTTGACCTCTCCGACAACAACATCGCCGGCACCCTCCCCGATGAAATCTCCCACCTAACCAACCTCCTCACCCTGAGGCTGCAGAACAACGCACTCTCCGGCAACATCCCGGACCTCTCCGCCGCGATGCCGAACCTCACCGAGCTCAACATGACAAACAACGAGTTCTCCGGTGGCATACCAAACTCCATGCTTAACAAATTCAGAGAATCAAGCTTCACCGGCAACGAAGGCCTATGCGGTACAAAACCACCATTCCCCATGTGTAATTCCAACAACAACAACAACAACAACAATAATAATAATAATAATAATAATTCTCCTCCTTATTCTGAACCGGTTCAGACGGTTCCTTCGAACCCGAGTTCGTATCCGGAAACGAGCGTGATCGCAAGACCCGGAAGCAAAACCCATAAGAGTTTGACCCCTGGTGCCATTGTGGCAATTGTGGTGGCGAATTGCGTGGCGTTGTTGGTTGTGACGTCATTCGTTGTGGCTCACTGTTGTGCTAAAGGGAGAGGTTCAAATTCTAACTCCTTGGTGGTTGGGAGTAGTAGTGATAAGAGGAAGAGTGGGAGTAGCTATGGGAGTAGTGAGAAAAAGGTGTATGCAAATAGTGGTGATAGTGATGGGAGTAGTGAGAGGGGAAAGTTGGTGTTTTTTGATAGGAGGAGTGAGTTTGAGTTGGAGGAGTTGTTGCGTGCGTCTGCGGAGATGCTTGGGAAGGGTAGTTTGGGAACTGTTTATAGGGCAGTGCTTGATGATGGTTGCACCGTGGCAGTGAAGAGGCTCAAGGATGCTAACCCATGTGCAAGGCATGAGTTTGAGCAATATATGGATGTCATTGGGAGGCTTAAACACCCAAACATTGTTAGGCTTAGAGCCTATTACTATGCCAAGGAAGAAAAGCTTCTTGTCTATGATTATCTCTCCAATGGCAGCTTGCATGCTCTCCTTCATGGGAACCGTGGTCCAGGAAGGATTCCATTGGATTGGACAACAAGGATAAGCTTGGTGTTAGGGGCAGCCAGGGGGCTAGCTCGGATTCATGCAGAGTACAGTGCAGCTAAAGTTCCACATGGGAACGTGAAATCCTCCAACGTGCTTCTTGACAAGAACGGTGTTGCTTGCATCTCAGACTTTGGGCTGTCACTGCTGCTGAACCCTGTTCATGCCATTGCAAGGTTAGGAGGGTACAGGGCACCTGAGCAAGCAGAACAACAACACAAGAGGCTGTCTCAGCAGGCCGACGTGTACAGTTTCGGCGTGTTGCTGTTGGAAGTTCTCACCGGTAGAGCGCCTTCCTCGCAATACCCTTCGCCGGCACGGCCTCGCGTGACAGGTGGTTATGATGATAACCAGGATCAGCATGGCGTGGATCTTCCCAAATGGGTTCGCTCCGTTGTGAAGGAAGAGTGGACTGGGGAGGTGTTTGATCAGGAACTGTTGAGGTACAAGAACATTGAGGAGGAGCTTGTGTCAATGCTACATGTTGGGTTGGCTTGTGCGGCGCCGCAGCCGGAGAAGAGGCCAACCATGGCAGAGGTTGTCAAGATGATTGAGGAGATCAGGGTGGAGCAATCTCCTCTTGGTGAGGACTATGATGAATCACGCAATTCACTTTCACCTTCTCTTCCCACCACTGAAGATGGTCTTGCTTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02442	4443	7032	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.13.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002442s00040627.1	PF00560.28	LRR_1	147	169	0.054
Glyur002442s00040627.1	PF00069.20	Pkinase	388	668	1.20E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.725
SRR1783600	control	7.353
SRR1783602	moderate drought stress	5.591
SRR1811619	moderate drought stress	5.585

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.052
DRR006520	Root Summer glycyrrhizin high producing strain	23.682
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	10.318
DRR006524	Root Summer glycyrrhizin low producing strain	10.282
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.907
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.763

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	26.679
SRR2868004	Drought Stress(Tissue:root)	19.015
SRR2967015	Control (Tissue:root)	19.407

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.847
SRR9715740	Leave	0.171
SRR9715741	Leave	0.851
SRR9715739	Root	12.631
SRR9715742	Root	8.141
SRR9715743	Root	7.939

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.059
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.057
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.030
SRR8749032	Uninduced	0.108

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	26.725
SRR8400027	Control-Root	38.999