Gene detail information of Glyur002444s00041715.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G11860.31.00E-49Glycine cleavage T-protein family
NRKDP20727.11.44E-60hypothetical protein JCGZ_21198 [Jatropha curcas]
COGYP_420129.11.00E-16glycine cleavage system aminomethyltransferase T [Magnetospirillum magneticum AMB-1]
Swissprottr|P54260|GCST_SOLTU1.00E-60Aminomethyltransferase, mitochondrial (Precursor)
trEMBLtr|A0A067JAF8|A0A067JAF8_JATCU5.00E-61Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold024442293123284-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00605gcvT, AMT EC:2.1.2.10 Carbon metabolism map01200
Glyoxylate and dicarboxylate metabolismmap00630
Glycine, serine and threonine metabolismmap00260
One carbon pool by folatemap00670


Gene Ontology

biological_process

GO:0006546  glycine catabolic process


molecular_function

GO:0004047  aminomethyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002444s00041715.1PF01571.16GCV_T121096.00E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.071
SRR1783600control0.028
SRR1783602moderate drought stress0.504
SRR1811619moderate drought stress0.237

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.613
DRR006520Root Summer glycyrrhizin high producing strain0.030
DRR006521Root Winter glycyrrhizin high producing strain0.490
DRR006522Root Winter glycyrrhizin high producing strain0.393
DRR006523Root Summer glycyrrhizin low producing strain0.395
DRR006524Root Summer glycyrrhizin low producing strain0.313
DRR006525Leaf Summer glycyrrhizin high producing strain0.702
DRR006526Leaf Summer glycyrrhizin high producing strain0.300

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.060
SRR2868004Drought Stress(Tissue:root)0.366
SRR2967015Control (Tissue:root)0.218

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.334
SRR9715740Leave2.528
SRR9715741Leave1.145
SRR9715739Root0.309
SRR9715742Root0.122
SRR9715743Root0.369

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.200
SRR8749028MeJA induced 9h0.186
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.143
SRR8400027Control-Root1.619

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved