Gene detail information of Glyur002452s00040421.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G54080.20homogentisate 1,2-dioxygenase
NRXP_004510037.10PREDICTED: homogentisate 1,2-dioxygenase-like [Cicer arietinum]
COGYP_003559253.14.00E-145homogentisate 1,2-dioxygenase [Sphingobium japonicum UT26S]
Swissprottr|Q9ZRA2|HGD_ARATH0Homogentisate 1,2-dioxygenase
trEMBLtr|I1LSW3|I1LSW3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G20220.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold024522196230055+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00451HGD, hmgA EC:1.13.11.5 Tyrosine metabolism map00350
Styrene degradationmap00643


Gene Ontology

biological_process

GO:0006559  L-phenylalanine catabolic process

GO:0006570  tyrosine metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004411  homogentisate 1,2-dioxygenase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002452s00040421.1PF04209.8HgmA113598.30E-159
Glyur002452s00040421.1PF04209.8HgmA3614125.50E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.214
SRR1783600control4.023
SRR1783602moderate drought stress8.876
SRR1811619moderate drought stress8.703

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.558
DRR006520Root Summer glycyrrhizin high producing strain4.232
DRR006521Root Winter glycyrrhizin high producing strain10.754
DRR006522Root Winter glycyrrhizin high producing strain10.748
DRR006523Root Summer glycyrrhizin low producing strain9.824
DRR006524Root Summer glycyrrhizin low producing strain9.516
DRR006525Leaf Summer glycyrrhizin high producing strain17.723
DRR006526Leaf Summer glycyrrhizin high producing strain17.601

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.796
SRR2868004Drought Stress(Tissue:root)26.826
SRR2967015Control (Tissue:root)31.433

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave36.670
SRR9715740Leave38.624
SRR9715741Leave50.948
SRR9715739Root8.690
SRR9715742Root5.282
SRR9715743Root5.229

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h24.934
SRR8749028MeJA induced 9h45.417
SRR8749029MeJA induced 9h40.481
SRR8749030Uninduced42.340
SRR8749031Uninduced98.796
SRR8749032Uninduced93.210

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.220
SRR8400027Control-Root5.951

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved