Gene detail

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Gene detail information of Glyur002455s00031746.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G19210.1	0	homolog of RAD54
NR	XP_004511285.1	0	PREDICTED: DNA repair and recombination protein RAD54-like isoform X2 [Cicer arietinum]
COG	YP_001318480.1	1.00E-48	non-specific serine/threonine protein kinase [Alkaliphilus metalliredigens QYMF]
Swissprot	tr\|Q0PCS3\|CHR25_ARATH	0	Protein CHROMATIN REMODELING 25
trEMBL	tr\|K7K5N1\|K7K5N1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G45596.1}

Sequence

Transcript Sequence

>Glyur002455s00031746.1
ATGGAGGAAGAGGAAGAGGAAGTGGTGTCGTGTTCCTCCGATTCCGGTGACGATGATGTTGAAGTTGAACAACGGAAATCACAGAATGTTGAAGCTCTCCTCAGGGGTAACCTCATCGTGAAGAGGCAATCGTTGCTACCGCGAGTTCTGTCTGGAGCGGCTGTTTGCAGGAATCCGTTTAAACCTCCATCCTCTAAATTATCTGATTCTTACAACAACAATCAAGACCTTACTCGCAGGCTTTCTGCTCGCAAAAGGTTTGTTCCGTGGGGCTCTCCTACTCCTACTCCTAGACCTACCACACCCCTCTTGGAGTTGGATTTGAATGCTGACGTTGATGTCGATGTTGCCGGGGAGGTGAAGCCGTCTTTACCCCCTGGAATTGATCCTCTAGTACTCTGGCACCCTCCTCAACACCACGAGCACGAGGATGAGCCTCCCAATTCCAATCCTAACTCTAATTTGACAACAATAACAGTTGACCCATTGCTTGTTCGTTTCCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTTATGTTTGATTGTGTCGCGGGACTATGTGGCACACCGGATATACATGGATGCATCTTGGCAGATGATATGGGGGCTGCATCTGATTGCTTCTCTTTGCTCAGTTTGGGGAAGACACTGCAGTCCATCACATTACTATATACTCTTATTTGTCAAGGGTTCGATGGGAAGCCAATGGTTAGAAAGGCCATCATTGTCACTCCTACCAGCCTTGTCAGCAATTGGGAAGCTGAAATCAAGAAGTGGGTTGGAGAAAGAGTTCACCTTGTTGCTCTGTGTGAAAGCACCAGAGAAGATGTTGTCTCTGGGATCGACAATTTTACAAGTCCCAGAAGCAATTTACAGGTGCTCATTGTTTCATATGAGACATTCCGAATGCATTCATCGAAGTTTAGCTCTAGTGGCTCATGTGACCTCCTCATCTGTGATGAGGCCCACAGACTAAAAAATGATCAGACAATAACAAACCGGGTACTATCCAAGTTCTTACCCCGCCCCCCGCCCCCCTTTTACAGGCATGTTTCTGAGTTAGTTCTTCCCGATTGCTATGAATTCCGTCTCACAAATACTTCCTGGATTAGGCATTGGCTTCGCTCCCATGCAAACTTCTATATCCTTATCTATTTTAACTCGTTCTCTTTTAATGTTTATGGCACATGCCACTTGCAGAATGACTTAGAAGAATTCTTCGCAATGGTTAACTTTACTAATCCTGGAATATTAGGTGATATTGCACATTTTCGACGTTACTATGAGGCACCGATTATTTGCGGAAGAGAACCTGCTGCCATTGCAGAAGAGAAGAAGCTAGGTGCCGAACGCGCTGCAGAATTAAGTGCCAAAGTTAATCGGTTCATATTAAGGAGGACTAATGCATTATTATCAAATCACTTACCACCAAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCACTACAATCAGATCTATATAAACATTTTATACAATCCAAAAATGTTAAACGGGTGATTACTGAAGAACTGAAGCAATCAAAGATTTTGGCCTACATAACAGCTCTCAAAAAGTTATGCAATCATCCAAAGCTCATCTATGATACCATACGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGGACTGCATTCGATTCTTCCCTCCTGAAATGTTATCTGGAAGGTGTGGGTCATGGACGGGAGGGCATGGAGCGTGGGTTGAGCTATCCGGGAAAATGCATGTCTTAGCAAGATTACTTGCTCACTTACGCCGGAGAACAAATGATCGCATTGTCCTTGTCTCAAACTACACTCAGACTCTTGATCTTTTTGCTCAATTGTGCCGGGAACAAAGGTACCCTCACTTGAGGCTTGATGGCGCTACATCAATCAGTAAAAGGCAAAAGTTGGTCAACTGCTTTAATGACCCATCTAAGGATGAATTTGTTTTTCTCTTAAGCAGCAAAGCTGGTGGCTGTGGACTTAATCTGATTGGTGCAAATCGACTTGTCTTGTTCGATCCTGATTGGAATCCTGCAAATGATAAACAAGCTGCAGCAAGAGTGTGGAGGGATGGACAGAAGAAGCGAGTTTACATTTATAGATTTTTGTGTGCCGGAACAATAGAGGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCGGGAGCAAACCGATAATGTTGTGGCTCAGGGTAACTTGCTTTCGACAGAGGATCTCCGGGATTTGTTTACTTTTCATGAGAACGTCAAGTCAGAGATTCATGAAAAGATGCAATGCGGTCGTTGCCGAACATTTGATGGGCCTCAAAACACGGACGTCCTATCTTCAACAATTAATAGTGAATCTGAGGAAGAAACCTCAGATATAGGTGGATTTGCAGAAATTGCTGGCTGCTTAGAGAATTTAAAAAGATCAGAAAAGCAGGTAGGGAACCCATTGGAAGAAGATTTAAGTAGTTGGGGCCATCATTTTTTCCCAACTTCTGTACCGGATGCTATCCTTCAGGCTTCAGCTGGTGATGAGGTGACTTTTGTCTTTACAAACCAAGTTAACGGAAAGCTCGTACCCGTTGAGTCCACAATAAGTCCCAAGCTACAGCAAAAGGAACTACTCAAGCTCAAGCCAAGACGGAACGTTGAGCAAAAATCCACCCCTTTTGCTTTACATGATAAACTATCACTGCGGTCTGCTTCCACTACGTCATGCTCCTTTCCGAAGGAATCACTAAATTCTGTCAAAATTACCAAAAATATCTCCATAAATGTAGCATTAAGGACNGAACAATCTCTTGTAAATGCAGTATTACCACAAAAAAGATCACGTCCTGCTGATAGTGGCGTTCTGTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02455	26590	35780	-

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10875	RAD54L, RAD54	EC:3.6.4.-	Homologous recombination	map03440

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002455s00031746.1	PF00176.18	SNF2_N	171	338	5.10E-22
Glyur002455s00031746.1	PF00176.18	SNF2_N	399	534	5.60E-19
Glyur002455s00031746.1	PF00271.26	Helicase_C	615	694	3.90E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.996
SRR1783600	control	1.023
SRR1783602	moderate drought stress	0.516
SRR1811619	moderate drought stress	0.557

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.280
DRR006520	Root Summer glycyrrhizin high producing strain	2.382
DRR006521	Root Winter glycyrrhizin high producing strain	0.563
DRR006522	Root Winter glycyrrhizin high producing strain	0.578
DRR006523	Root Summer glycyrrhizin low producing strain	2.085
DRR006524	Root Summer glycyrrhizin low producing strain	1.955
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.408
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.305

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	8.177
SRR2868004	Drought Stress(Tissue:root)	7.734
SRR2967015	Control (Tissue:root)	6.945

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.131
SRR9715740	Leave	0.742
SRR9715741	Leave	0.931
SRR9715739	Root	0.222
SRR9715742	Root	0.234
SRR9715743	Root	0.460

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.677
SRR8749028	MeJA induced 9h	5.944
SRR8749029	MeJA induced 9h	5.750
SRR8749030	Uninduced	3.856
SRR8749031	Uninduced	6.768
SRR8749032	Uninduced	5.254

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	5.989
SRR8400027	Control-Root	4.306