Gene detail information of Glyur002475s00040284.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G23160.1 | 8.00E-19 | cysteine-rich RLK (RECEPTOR-like protein kinase) 8 |
| NR | CAN78487.1 | 6.18E-89 | hypothetical protein VITISV_004930 [Vitis vinifera] |
| Swissprot | tr|P10978|POLX_TOBAC | 2.00E-26 | Endonuclease |
| trEMBL | tr|A5AZ66|A5AZ66_VITVI | 2.00E-89 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN78487.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02475 | 3408 | 12287 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002475s00040284.1 | PF13976.1 | gag_pre-integrs | 13 | 47 | 1.80E-08 |
| Glyur002475s00040284.1 | PF00665.21 | rve | 70 | 188 | 2.70E-24 |
| Glyur002475s00040284.1 | PF03101.10 | FAR1 | 519 | 602 | 1.50E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.019 |
| SRR1811619 | moderate drought stress | 0.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.028 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.016 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.861 |
| SRR8749028 | MeJA induced 9h | 0.371 |
| SRR8749029 | MeJA induced 9h | 0.553 |
| SRR8749030 | Uninduced | 0.193 |
| SRR8749031 | Uninduced | 0.015 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.003 |
| SRR8400027 | Control-Root | 0.002 |