Gene detail

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Gene detail information of Glyur002479s00038481.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G11590.1	6.00E-47	Integrase-type DNA-binding superfamily protein
NR	XP_003600273.1	0	ATP-dependent DNA helicase PIF1 [Medicago truncatula]
COG	YP_003986044.1	2.00E-12	helicase [Gardnerella vaginalis ATCC 14019]
Swissprot	tr\|Q9LYD3\|DREB3_ARATH	7.00E-53	Dehydration-responsive element-binding protein 3
trEMBL	tr\|J3SIC4\|J3SIC4_BETVU	0	Putative PIF1 DNA helicase/replication protein A1-like protein {ECO:0000313\|EMBL:AFK13834.1}

Sequence

Transcript Sequence

>Glyur002479s00038481.1
TGGCAGCCTTAATAGTTGGAGATTTGGGAAGTATGGACGTTGGAAGAGACATCATTGTCAAGAAAAGATGTGAAGATATTCCTATTAGAAATGCTGAGAGTGAATCTCAGAGTCGTTCTAGACTGAGGGTGACTTTTAGGGAGTTTATTGCGTTTAGAATCCAAGACAGAGAAGAGGAGTTTGCATCTGATAGACCAGATATTGTCTCAAGAGTCTTCAAAATGAAGCTTGATGAATTGATGAACGACTTCAAGAAGAAACAAATTTTTGGAAAGATTAATGCAGCAAATGCTGTTGCAACCTACATGATACATGGTCCATGTGGAGTTGCCAACACCAAGTCACCTTGCATGAAAGGAAGAAGATGCTCAAAGTACTATCCAAAAAAATTTCACAGTTCAACTACCATAGATGAGGATGGATACCCATGCTACAAGCGTCAAGATTCAGGTTTATTCATTGAAAAAAATGGAATTAAATTGGATAACAGGAGTGTAGTTCCTTACAATCCGACTCTGTTGATGCGATATCAAGGGCATGTGAATATGGAATATTGTAACAAGTCTAATTCCATAAAGTATTTATTTAAATATGTCAACAAGGGTCCTGACCGAGCCACTATTGAGATAACAAATTCTCAGGAGAATGGTGATAAAGCACCAGTTGTTGATGAAATTAAAATGTTTTATGATTGCAGATATTTGTCACCATGTGAAGCTGTTTGGAGGACATTTGGTTTTGATATTCACAAGCGGTGGCCACCCGTTCAAAGATTGTTGTTCCATCTGTTCGATGAACAATCTATTCTATTTAAGGATGAGGAGAAAATTGACACAGCAGGTTCTTCTATTGGGAGGCTAACATATGTTCCAGCTGGGACAGTTCAAAGAGGTTGTACTAGCTACGAAAGTATTAGGACTGTTGATGGCAATACATACACGACATTCCAAGAGGCGTGTTATGCACTAGGTTTGTTAGCAAATGACAAAGAGTATATTGATGCAATTTTGAGAAGATTATTTGTGACATTACTCATGATGAACACAATGTCCAAGCCTGACGCTGTTTGGAACTCCACTTGGCTTTTGTTGTGTGATGGAATTCTTTATGAGATGAGGAAGTTTGAAGAAATGTTGCATTTTCAGAACAAATTTATTGTTGATGAATTAAATTATGATAGAGAGCAATTAGCTGCACTACATGCATCCTTCATGGAAAAGTTGACAGATAAACAACTAGGTGTTTACCACAGCATCATGAATGCAGCATTATCTAATGCAGGAGGAGTCTTTTTTTTATATGGATATGGTGGAACTGGGAAGACATTCCTTTGGAATACATTGTCTGTTGCTCTTCGATCACAGCGAATGATTGTTCTCAATGTTGCTTCCAGTGGCATTGCGTCTTTGCTGTTACCTGGAGGTAAGACTGCACATTCTACTTTTTGTATTCCATTAATAATCAATGAGGAATCAACTTGCAACATTAGTCAAGGCAGTCTTCGTGCAAAATTGTTGATTGAGACCAAATTAATTATTTGGGATGAAGCTCCAATGATGAATAGACTTTGTTTTGAGGCACTTGATCGCACTTTAAGGGACTTGATGAAATTAAAATGTCCAGAAAACAATGAAAAACCATTTGGTGGAAAAACTATTGTATTTGGTGGAGATTTTAGACAGATTTTGCCAGTGATTAGAAAAGCATCAAGGAAAGATATAGTCCAAGCAACCATCAACTCTTCTGAGATTTGGAAATCTTGCAAAGTTTTGAAATTGACTCAAAACATGAGATTAACTACTGCAAGAACAGATGACACTGCCAATGAAATTAAACGATTTGCTGATTGGATACTTCAAGTTGGAGATGATCGAGCAATACTTGCTCCTACTCTAGAAAGTGTTGAACAAGTTAATGATTTATTGCTATCTTTGATTCCTGGAGATGAGAAAGAGTATTTGAGTTCTGATACACCTTGCCATTCAGATCAGAATGATGATATTGAAGCTGGGTGGTTTACATCAGAATTTTTGAATGACATCAAGTGTTCTGGTATTCCAAATCATCAGTTGAGACTAAAGATTGGAGTACCTGTGATGCTTATGAGAAATATTGACCAAGCAAATTCATTGTGCAATGGAACAAGGTTGCAAGAATCAACAAAGAGCAAAACCAGACATGGAATTGCTATGGTTGTTGGCTTTCTTTTGAAGGCTGAAAGCCGGGTTCAGTGTCCCGGTTTCCGTTTCCCACGGAGAGACCACTGGTTAAGTACCCTCCCTCAGCGCCAATCTGATAGTGTTGAAGACTTCGACGTGCTAAAGCGCATTCGGGACACGAACAAGCACCCGGTGTACCGTGGGGTGCGAATGCGTAACTGGGGGAAATGGGTGTCGGAGATTCGCGAGCCGCGGAAGAAGTCTCGCATATGGCTAGGCACATTCCCCACCCCTGAAATGGCGGCCAGGGCACACGACGTGGCGGCGCTGAGCATAAAGGGAAGCGCCGCCATTCTCAACTTCCCCGAGTTGGCCAACTCGCTCCCTCGACCCGCCTCACTCGCCCCGCGCGACGTCCAAGCCGCCGCCACCAAAGCCGCTCACATGGACCTTCCCTACCCCACGCTTCATCAACAGCAACAACACGACGATCAGTGTGGGGAATTGGAAAAGGAGTTCGTGTTGATGGAATTCGTGGATGCGTGGATGTACCAGCCTCCCTCGTTACACACCATGGAAGACGTGCTCTGGAGTACTACTTCCAGAGAGGTTTGCCTTCTGTGGAAAGCTGAAAAGGGCAAAAGAAGGATAGAAAGGGGGAATCTTGATGATGATGTTATTGACCACATGCCAGAAAGACCAGGGAAAGATCAAAGAGGAATGACTGCAACAATGGAAGGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02479	9	9971	+

Gene family

Gene family	subfamily
Transcription Factors Family	ERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000723 telomere maintenance

GO:0006281 DNA repair

GO:0006355 regulation of transcription, DNA-templated

molecular_function GO:0003677 DNA binding GO:0003678 DNA helicase activity GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002479s00038481.1	PF14214.1	Helitron_like_N	47	85	1.20E-08
Glyur002479s00038481.1	PF05970.9	PIF1	396	612	1.60E-91
Glyur002479s00038481.1	PF05970.9	PIF1	613	707	3.50E-29
Glyur002479s00038481.1	PF00847.15	AP2	773	823	2.20E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.613
SRR1783600	control	2.303
SRR1783602	moderate drought stress	3.606
SRR1811619	moderate drought stress	3.363

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.516
DRR006520	Root Summer glycyrrhizin high producing strain	4.791
DRR006521	Root Winter glycyrrhizin high producing strain	1.506
DRR006522	Root Winter glycyrrhizin high producing strain	1.651
DRR006523	Root Summer glycyrrhizin low producing strain	2.840
DRR006524	Root Summer glycyrrhizin low producing strain	3.155
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.464
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.406

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.255
SRR2868004	Drought Stress(Tissue:root)	1.776
SRR2967015	Control (Tissue:root)	1.729

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.509
SRR9715740	Leave	2.338
SRR9715741	Leave	1.654
SRR9715739	Root	3.730
SRR9715742	Root	2.576
SRR9715743	Root	3.095

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.238
SRR8749028	MeJA induced 9h	4.013
SRR8749029	MeJA induced 9h	5.120
SRR8749030	Uninduced	2.368
SRR8749031	Uninduced	0.972
SRR8749032	Uninduced	1.179

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.774
SRR8400027	Control-Root	4.004