Gene detail

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Gene detail information of Glyur002487s00037001.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G25830.1	1.00E-74	GATA transcription factor 12
NR	XP_003588383.1	6.38E-163	GATA transcription factor [Medicago truncatula]
Swissprot	tr\|P69781\|GAT12_ARATH	1.00E-97	GATA transcription factor 12
trEMBL	tr\|G7IB47\|G7IB47_MEDTR	2.00E-163	GATA transcription factor-like protein {ECO:0000313\|EMBL:AES58634.1}

Sequence

Transcript Sequence

>Glyur002487s00037001.1
ATGGAAGCACCCAACTTTTTCCAAAGCGGCTTTTGCCCACAACAATTCCCTTCCGACAACAACAACAAGGGAAGCGGCAACAACAATAACAACACCGACCAATTCATCGTAGAGGACCTCCTCGACTTCTCCAACGACGACGACGCTATCATTACCGACGGAAACCTCGACTCCGTCACCGGAAACTCCACCGACTCCTCCACCGTCACCGCCGTCGATAGCTGCAACTCCTCCTCTTTCTCCGGGTGCGACCCCAATCCCGTCGCCGATATTGGCTGCCGGACTNTCTCCGACGGCCATTTCTCCGGTGACCTCTGCGTTCCGTATGATGATTTAGCGGAGCTGGAATGGCTTTCGAATTTCGTGGAGGAATCGTTTTCGAGCGAGGACCTGCAGAAGCTGCAGCTGATATCAGGCGTGAAGGCGCGAAACGACGACGCATCGGAGGCCCGGGAGTTCCAGTCCGGGCCCAACCGAACAAACAGCCCGATATTCAACACGGAAGTATCAGTCCCCGCAAAGGCCCGCAGCAAGAGGACCCGTGGGCCCCCATGCAATTGGGCCTCACGCCTCCTTGTCCTGTCCCCAACGACGTCGTCTTCGGACCCCACCGAACTCGTCATTCCAACCNCCACCCTTCCGGCTCCCGCCGCCGTTAAGAAGGCAGCGAAGTCGGCACCGAGAAAGAAGGACGGCGGAGACGGGAGCTCCGGTGACGGCCGCAAGTGCCTGCATTGCGCGACGGACAAGACCCCCCAGTGGCGAACCGGGCCCATGGGCCCGAAGACATTGTGCAATGCCTGTGGCGTGAGGTATAAGTCGGGCCGGTTGGTGCCCGAATATAGGCCCGCGGCGAGCCCAACTTTCGTGCTGACGAAGCACTCGAACTCGCATCGAAAGGTGCTTGAGCTTCGTAGGCAGAAGGAGATGGTGCGGGCCCAACAGCACCAGCAGCAACATTTCTTACAGCATCATCATCAGAACGTGATGTTCGATGTGTCCAACGGTGACGATTACTTGATCCACCAACATGTNGGGCCCGATTTCAGGCAGCTGATCTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02487	30708	32346	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0045893 positive regulation of transcription, DNA-templated

cellular_component GO:0005634 nucleus molecular_function GO:0003677 DNA binding GO:0003700 transcription factor activity, sequence-specific DNA binding GO:0008270 zinc ion binding GO:0043565 sequence-specific DNA binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002487s00037001.1	PF00320.22	GATA	243	277	3.10E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.068
SRR1783600	control	0.069
SRR1783602	moderate drought stress	0.067
SRR1811619	moderate drought stress	0.072

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.028
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.103
DRR006524	Root Summer glycyrrhizin low producing strain	0.103
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.136
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.174

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	4.774
SRR2868004	Drought Stress(Tissue:root)	2.297
SRR2967015	Control (Tissue:root)	2.573

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.239
SRR9715740	Leave	0.268
SRR9715741	Leave	0.000
SRR9715739	Root	0.180
SRR9715742	Root	0.099
SRR9715743	Root	0.243

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.067
SRR8749028	MeJA induced 9h	0.333
SRR8749029	MeJA induced 9h	0.048
SRR8749030	Uninduced	0.534
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.102

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.296
SRR8400027	Control-Root	0.260