Gene detail information of Glyur002512s00038137.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G11820.22.00E-108hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase
NRXP_003620731.12.23E-148Hydroxymethylglutaryl-CoA synthase [Medicago truncatula]
COGYP_003957743.11.00E-20hydroxymethylglutaryl-CoA synthase [Stigmatella aurantiaca DW4/3-1]
Swissprottr|P54873|HMCS_ARATH6.00E-133Hydroxymethylglutaryl-CoA synthase
trEMBLtr|G7KQF5|G7KQF5_MEDTR8.00E-1493-hydroxy-3-methylglutaryl coenzyme A synthase {ECO:0000313|EMBL:AES76949.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold025121331820180-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01641E2.3.3.10 EC:2.3.3.10 Butanoate metabolism map00650
Synthesis and degradation of ketone bodiesmap00072
Valine, leucine and isoleucine degradationmap00280
Terpenoid backbone biosynthesismap00900


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0008299  isoprenoid biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0004421  hydroxymethylglutaryl-CoA synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002512s00038137.1PF01154.12HMG_CoA_synt_N521525.90E-49
Glyur002512s00038137.1PF08540.5HMG_CoA_synt_C1532059.90E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.017
SRR1783600control0.006
SRR1783602moderate drought stress0.126
SRR1811619moderate drought stress0.143

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain0.052
DRR006526Leaf Summer glycyrrhizin high producing strain0.161

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.001
SRR2868004Drought Stress(Tissue:root)0.011
SRR2967015Control (Tissue:root)0.066

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.413
SRR9715740Leave0.084
SRR9715741Leave0.127
SRR9715739Root0.048
SRR9715742Root0.015
SRR9715743Root0.000

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.038
SRR8749028MeJA induced 9h0.089
SRR8749029MeJA induced 9h0.042
SRR8749030Uninduced0.151
SRR8749031Uninduced0.102
SRR8749032Uninduced0.042

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.441
SRR8400027Control-Root0.091

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved