Gene detail information of Glyur002517s00037494.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT1G08080.1 | 1.00E-57 | alpha carbonic anhydrase 7 |
NR | KEH42156.1 | 6.56E-144 | eukaryotic-type carbonic anhydrase [Medicago truncatula] |
COG | YP_004152175.1 | 1.00E-34 | Carbonate dehydratase [Thermovibrio ammonificans HB-1] |
Swissprot | tr|Q8L817|ATCA7_ARATH | 2.00E-69 | Alpha carbonic anhydrase 7 (Precursor) |
trEMBL | tr|A0A072VKK0|A0A072VKK0_MEDTR | 2.00E-144 | Eukaryotic-type carbonic anhydrase {ECO:0000313|EMBL:KEH42156.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold02517 | 2134 | 5956 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K01674 | cah | EC:4.2.1.1 | Nitrogen metabolism | map00910 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur002517s00037494.1 | PF00194.16 | Carb_anhydrase | 104 | 232 | 1.50E-22 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 4.660 |
SRR1783600 | control | 4.782 |
SRR1783602 | moderate drought stress | 1.498 |
SRR1811619 | moderate drought stress | 1.614 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 0.121 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 0.117 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.208 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.171 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 84.205 |
SRR2868004 | Drought Stress(Tissue:root) | 49.913 |
SRR2967015 | Control (Tissue:root) | 50.367 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 0.000 |
SRR9715740 | Leave | 0.000 |
SRR9715741 | Leave | 0.073 |
SRR9715739 | Root | 0.000 |
SRR9715742 | Root | 0.442 |
SRR9715743 | Root | 0.615 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 99.649 |
SRR8749028 | MeJA induced 9h | 240.759 |
SRR8749029 | MeJA induced 9h | 111.759 |
SRR8749030 | Uninduced | 249.642 |
SRR8749031 | Uninduced | 112.456 |
SRR8749032 | Uninduced | 115.378 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 47.230 |
SRR8400027 | Control-Root | 20.931 |