Gene detail information of Glyur002525s00039527.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G53810.12.00E-88Concanavalin A-like lectin protein kinase family protein
NRCBI30516.30unnamed protein product [Vitis vinifera]
COGNP_864945.12.00E-12glucosesorbosone dehydrogenase [Rhodopirellula baltica SH 1]
Swissprottr|Q9M345|LRK42_ARATH4.00E-115L-type lectin-domain containing receptor kinase IV.2 (Precursor)
trEMBLtr|A0A072U0N2|A0A072U0N2_MEDTR3.00E-173L-type lectin-domain receptor kinase IV.2-like protein {ECO:0000313|EMBL:KEH22956.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0252545646501-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.11.1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups

GO:0030246  carbohydrate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002525s00039527.1PF00139.14Lectin_legB232592.10E-83
Glyur002525s00039527.1PF00069.20Pkinase3444233.30E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.722
SRR1783600control0.748
SRR1783602moderate drought stress1.502
SRR1811619moderate drought stress1.586

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.042
DRR006520Root Summer glycyrrhizin high producing strain1.824
DRR006521Root Winter glycyrrhizin high producing strain1.635
DRR006522Root Winter glycyrrhizin high producing strain1.530
DRR006523Root Summer glycyrrhizin low producing strain1.576
DRR006524Root Summer glycyrrhizin low producing strain1.510
DRR006525Leaf Summer glycyrrhizin high producing strain16.805
DRR006526Leaf Summer glycyrrhizin high producing strain17.346

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.117
SRR2868004Drought Stress(Tissue:root)6.364
SRR2967015Control (Tissue:root)5.082

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.920
SRR9715740Leave10.927
SRR9715741Leave13.034
SRR9715739Root0.871
SRR9715742Root2.107
SRR9715743Root1.597

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.616
SRR8749028MeJA induced 9h1.874
SRR8749029MeJA induced 9h0.792
SRR8749030Uninduced0.931
SRR8749031Uninduced0.368
SRR8749032Uninduced0.262

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.845
SRR8400027Control-Root1.831