Gene detail information of Glyur002525s00039527.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT3G53810.1 | 2.00E-88 | Concanavalin A-like lectin protein kinase family protein |
NR | CBI30516.3 | 0 | unnamed protein product [Vitis vinifera] |
COG | NP_864945.1 | 2.00E-12 | glucosesorbosone dehydrogenase [Rhodopirellula baltica SH 1] |
Swissprot | tr|Q9M345|LRK42_ARATH | 4.00E-115 | L-type lectin-domain containing receptor kinase IV.2 (Precursor) |
trEMBL | tr|A0A072U0N2|A0A072U0N2_MEDTR | 3.00E-173 | L-type lectin-domain receptor kinase IV.2-like protein {ECO:0000313|EMBL:KEH22956.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold02525 | 4564 | 6501 | - |
Gene family
Gene family | subfamily |
---|---|
Protein Kinases Family | PPC:1.11.1 |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
-- | -- | -- | -- | -- |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur002525s00039527.1 | PF00139.14 | Lectin_legB | 23 | 259 | 2.10E-83 |
Glyur002525s00039527.1 | PF00069.20 | Pkinase | 344 | 423 | 3.30E-17 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 0.722 |
SRR1783600 | control | 0.748 |
SRR1783602 | moderate drought stress | 1.502 |
SRR1811619 | moderate drought stress | 1.586 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 2.042 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 1.824 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 1.635 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 1.530 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 1.576 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 1.510 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.805 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.346 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 3.117 |
SRR2868004 | Drought Stress(Tissue:root) | 6.364 |
SRR2967015 | Control (Tissue:root) | 5.082 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 7.920 |
SRR9715740 | Leave | 10.927 |
SRR9715741 | Leave | 13.034 |
SRR9715739 | Root | 0.871 |
SRR9715742 | Root | 2.107 |
SRR9715743 | Root | 1.597 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 0.616 |
SRR8749028 | MeJA induced 9h | 1.874 |
SRR8749029 | MeJA induced 9h | 0.792 |
SRR8749030 | Uninduced | 0.931 |
SRR8749031 | Uninduced | 0.368 |
SRR8749032 | Uninduced | 0.262 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 1.845 |
SRR8400027 | Control-Root | 1.831 |