Gene detail

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Gene detail information of Glyur002535s00042178.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G24130.1	0	Leucine-rich receptor-like protein kinase family protein
NR	KHN23949.1	0	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Glycine soja]
COG	YP_004775215.1	1.00E-52	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9ZUI0\|Y2241_ARATH	0	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 (Precursor)
trEMBL	tr\|I1KDC0\|I1KDC0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G25110.1}

Sequence

Transcript Sequence

>Glyur002535s00042178.1
ATGATGGGTTTGCTTCCATTTTCAATATTAGTTCTATTTCTCTATTTAACCNTTGTTCATTCTGGTGTTTATGGGGATGAAAAAAGTTCACTTCTTTCATTCATGTCAGGCATTGTTTCTGACCCCAAAAACGTTCTAGAGAATTGGAAGTCATCACAGGGTGGTGTTGTTCATGTCTGCAATTGGTATGGTGTGAGATGCAACAACAATGNAAGTGGCAACATCATAGAGCTTGACCTTAATGGAAGCTCACTAGTGGGAACCATTTCCCCTGCTCTTGCCAACCTCTCTTTTTTGCAAATTCTTGATCTTTCTGATAACTTTCTTGTGGGTCACATCCCAAAGAAACTGGGCCATTTGATTCACCTTAGACAACTCAGTTTATCTGGGAACTTTCTTGAAGGGGAAATTCCCCATGGGTTGGGTTCACTTCAAAATTTGAACTACCTCAACATGGGGAGTAATAATCTTGAGGGTGAGATTCCACCAACACTTTTCTGCAATGCTTCTTCCAATTTGAGGTATATAGACCTCTCTAACAATTCCTTGGGGGGACAAATACCCTTGAGTAATAGTAATGAGTGTGTCCTCATAGAACTTAGGTTCCTCTTACTTTGGTCTAACAACCTTGTAGGCCAAGTTCCTTTGGCTCTTTCAAACTCCACTAAACTTAAATGGCTTGATTTGGAGTCAAATGTGTTGAGTGGGGAGCTACCATCTGAAATTGTGCATAATTGGCCACAATTGCAGTTCCTCTATCTATCATATAATGACTTTGTTAGCCATGATGGTAACACCAACCTTGAACCTTTCTTTACTTCCTTGATGAACTTGTCTAACATTCAAGAACTCGAGTTGGCCGGAAACAACCTTGGAGGGAAGCTACCACATGTCATTGGTGATCTTCCAACTAGCCTTTTACAACTTCACCTAGAAGACAACCTTATCTATGGTCCTATACCTCCAACTATTGGCAACCTTGTTAACCTGACTCTTTTGAACTTTTCCAGTAACATGCTGAATGGATCAATACCCCCAAGTCTATGCCAGATGAGAGGGCTAGAGAGGATTTACTTGTCAAATAATTCACTATCTGGGGACATTCCTTCAACCCTTGGTGGCATTCAGCATCTGGGNCTTGTTGACTTGTCAAGGAACAAGCTTTCTGGATCAATACCAGACAGTTTTGCTAACCTCTCCCAATTAAGAAGCCTTTTGCTTTATGACAACCAGCTTTCTGGAACCATTCCACCAAGCTTGGGGAAAAGTGTCAATTTAGAGATTTTGGACCTATCCCACAACAAGATCTNAGGAATGGTCCCCAAAGAAGTTGCAGCCTTGGCCAGCTTGAAACTATACTTGAATTTATCAAGCAATGCCTTGCAAGGCCCTTTACCAATAGAGCTCTCCAAAATGGACATGGTGCTAGCTATTGATCTTTCCATGAACAATCTCTCTGGCAGAATCCCACCACAGCTTGAAAGTTGCATAGCACTAGAGTACCTCAACCTTTCTGGTAACTCATTAGAAGGTCCTCTCCCAGATTCATTAGGCCAATTGCCTTATATTCAAGCACTTGATGTGTCTTCAAATCAANTGACTGGGGCAATACCAAAGTCCCTTCAGTTGTCCTCCACTCTCAAGATGCTTAATTTCTCTTTCAACAAGTTCTCAGGGAGTGTCTCAAACAAAGGGTTTTTTTCATCCTTGACCATAAACTCTTTCCTTGGAAATGATGGTCTTTGTGGCTCAGTAAAAGGCATGCAAAGCTGCCACAAGAAAACCAGGTATCATTTGGTTCTATTGTTGATCCTAGTGTTACTATGTGGCACAACCCTGCTGTGCATGTTTGGGTACACCAGAATAATCGAGTCGAAAGTCCGAAAACAATTGGCAATAGCTAGCAGAAAGGACTTGAAGGATGAAGATGAGGAAACAAAGGAGCTCAAGTACCCAAGAATTTCATATGGACAACTCACTGAAGCCACTGGAGGCTTTAGTGCTTCGAGTCTAATTGGTTCNGGTCGGTTTGGACGCGTCTACAAAGGAGTTCTCCAAGACAACACAAGAATAGCAGTGAAGGTATTGAACACAGCAACAGGAGCAGAGGTTTCAGGGAGTTTCAGGAGGGAATGCCAAATCCTGAAAAGGACTAGGCACAGGAACTTNATAAGGATACTCACAATTTGCAGTAAGCAAGAGTTTAAGGCTCTTGTTCTTCCACTGATGCCAAATGGTAGCCTTGAGAGACACTTGTATCCAAGCCATGGGTTAAGCCAAAGGCTGGACATAGTTCAGTTGGTGAGGATCTGCAGTGATGTTGCTGAGGGAATGGCCTATCTGCATCACTATTCTCCAGTTAAAGTTGTGCACTGTGATCTTAAGCCTAGCAATATACTACTTGATGATGATTTTACAGCTTTGGTAACTGATTTTGGTATTGCAAGGCTTGTAAAAAGTGATGAGAACTTGTCCTCTAGTGACTCTCCATCTTTCAGCTCAACACATGGTTTGTTATGTGGNTCTGTTGGCTACATAGCCCCTGAGTATGGAATGGGAAAACATGCTTCAACACAGGGTGATGTGTACAGTTTTGGAGTAATTCTGCTAGAAATAGTAACAGGTAGACGCCCCACTGATGTCCTTGTCCATGAAGGCTCTAGCTTGCATGAATGGGTTAAGACACAATATCCAAACAAGCTTGATAACGTTGTTGAACAAGCATTGAAACGGTGCTTTCCATCAGTTATTATGCCAAGTCATCATCACCATCACAAAATTGGGCAAGATGTTGTATTGGAGCTCATAGAATTGGGGATTATGTGCACACTCCACAATCCTTCAACAAGACCAAGCATGCTTGATATAGCCCAAGAAATGGGAAGATTGAAGGACTACCTCTCTAATCATCAATCTTCTCTTATTGGAGATGTCAATGCTAAGCTTANTTCTTTCTGCACCAAGATAAATTTTGTTGGAAAATAA

Protein Sequence

>Glyur002535s00042178.1
MMGLLPFSILVLFLYLTXVHSGVYGDEKSSLLSFMSGIVSDPKNVLENWKSSQGGVVHVCNWYGVRCNNNXSGNIIELDLNGSSLVGTISPALANLSFLQILDLSDNFLVGHIPKKLGHLIHLRQLSLSGNFLEGEIPHGLGSLQNLNYLNMGSNNLEGEIPPTLFCNASSNLRYIDLSNNSLGGQIPLSNSNECVLIELRFLLLWSNNLVGQVPLALSNSTKLKWLDLESNVLSGELPSEIVHNWPQLQFLYLSYNDFVSHDGNTNLEPFFTSLMNLSNIQELELAGNNLGGKLPHVIGDLPTSLLQLHLEDNLIYGPIPPTIGNLVNLTLLNFSSNMLNGSIPPSLCQMRGLERIYLSNNSLSGDIPSTLGGIQHLGLVDLSRNKLSGSIPDSFANLSQLRSLLLYDNQLSGTIPPSLGKSVNLEILDLSHNKIXGMVPKEVAALASLKLYLNLSSNALQGPLPIELSKMDMVLAIDLSMNNLSGRIPPQLESCIALEYLNLSGNSLEGPLPDSLGQLPYIQALDVSSNQXTGAIPKSLQLSSTLKMLNFSFNKFSGSVSNKGFFSSLTINSFLGNDGLCGSVKGMQSCHKKTRYHLVLLLILVLLCGTTLLCMFGYTRIIESKVRKQLAIASRKDLKDEDEETKELKYPRISYGQLTEATGGFSASSLIGSGRFGRVYKGVLQDNTRIAVKVLNTATGAEVSGSFRRECQILKRTRHRNXIRILTICSKQEFKALVLPLMPNGSLERHLYPSHGLSQRLDIVQLVRICSDVAEGMAYLHHYSPVKVVHCDLKPSNILLDDDFTALVTDFGIARLVKSDENLSSSDSPSFSSTHGLLCGSVGYIAPEYGMGKHASTQGDVYSFGVILLEIVTGRRPTDVLVHEGSSLHEWVKTQYPNKLDNVVEQALKRCFPSVIMPSHHHHHKIGQDVVLELIELGIMCTLHNPSTRPSMLDIAQEMGRLKDYLSNHQSSLIGDVNAKLXSFCTKINFVGK

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02535	17505	21054	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002535s00042178.1	PF08263.7	LRRNT_2	26	68	1.00E-08
Glyur002535s00042178.1	PF00560.28	LRR_1	99	120	0.13
Glyur002535s00042178.1	PF00560.28	LRR_1	122	144	0.18
Glyur002535s00042178.1	PF00560.28	LRR_1	146	168	0.34
Glyur002535s00042178.1	PF00560.28	LRR_1	172	190	0.36
Glyur002535s00042178.1	PF13855.1	LRR_8	199	258	6.60E-07
Glyur002535s00042178.1	PF13855.1	LRR_8	353	412	3.80E-08
Glyur002535s00042178.1	PF00560.28	LRR_1	425	442	0.9
Glyur002535s00042178.1	PF00560.28	LRR_1	499	520	0.02
Glyur002535s00042178.1	PF00069.20	Pkinase	669	958	2.90E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.060
SRR1783600	control	0.049
SRR1783602	moderate drought stress	0.102
SRR1811619	moderate drought stress	0.101

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.261
DRR006522	Root Winter glycyrrhizin high producing strain	0.218
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.031
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.031

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.169
SRR2868004	Drought Stress(Tissue:root)	0.654
SRR2967015	Control (Tissue:root)	1.188

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	0.033
SRR9715742	Root	0.305
SRR9715743	Root	0.218

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.032
SRR8749028	MeJA induced 9h	0.190
SRR8749029	MeJA induced 9h	0.020
SRR8749030	Uninduced	0.021
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.057

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.178
SRR8400027	Control-Root	0.077