Gene detail information of Glyur002538s00029058.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20640.2 | 0 | Plant regulator RWP-RK family protein |
| NR | KEH36316.1 | 0 | plant regulator RWP-RK family protein [Medicago truncatula] |
| Swissprot | tr|Q9LE38|NLP4_ARATH | 0 | Protein NLP4 |
| trEMBL | tr|A0A072V3U8|A0A072V3U8_MEDTR | 0 | Plant regulator RWP-RK family protein {ECO:0000313|EMBL:KEH36316.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02538 | 4002 | 8988 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | RWP-RK |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002538s00029058.1 | PF02042.10 | RWP-RK | 581 | 632 | 1.60E-26 |
| Glyur002538s00029058.1 | PF00564.19 | PB1 | 810 | 891 | 1.30E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.995 |
| SRR1783600 | control | 6.020 |
| SRR1783602 | moderate drought stress | 8.005 |
| SRR1811619 | moderate drought stress | 7.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.804 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.690 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.568 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.539 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.247 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.402 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.032 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 31.206 |
| SRR2868004 | Drought Stress(Tissue:root) | 39.410 |
| SRR2967015 | Control (Tissue:root) | 33.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.624 |
| SRR9715740 | Leave | 20.796 |
| SRR9715741 | Leave | 19.096 |
| SRR9715739 | Root | 2.714 |
| SRR9715742 | Root | 3.214 |
| SRR9715743 | Root | 3.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.307 |
| SRR8749028 | MeJA induced 9h | 4.161 |
| SRR8749029 | MeJA induced 9h | 2.129 |
| SRR8749030 | Uninduced | 2.019 |
| SRR8749031 | Uninduced | 1.482 |
| SRR8749032 | Uninduced | 0.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.683 |
| SRR8400027 | Control-Root | 9.891 |