Gene detail information of Glyur002542s00041340.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23880.1 | 2.00E-22 | F-box and associated interaction domains-containing protein |
| NR | XP_004486107.1 | 1.39E-80 | PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] |
| Swissprot | tr|Q9LIR8|FBK67_ARATH | 2.00E-27 | F-box/kelch-repeat protein At3g23880 |
| trEMBL | tr|I1MFB8|I1MFB8_SOYBN | 2.00E-76 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G10860.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02542 | 25703 | 26932 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002542s00041340.1 | PF00646.28 | F-box | 51 | 96 | 2.80E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.462 |
| SRR1783600 | control | 4.548 |
| SRR1783602 | moderate drought stress | 5.010 |
| SRR1811619 | moderate drought stress | 5.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.822 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.707 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.282 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.980 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.228 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.148 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.525 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.675 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.957 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.505 |
| SRR2967015 | Control (Tissue:root) | 3.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.740 |
| SRR9715740 | Leave | 2.020 |
| SRR9715741 | Leave | 2.308 |
| SRR9715739 | Root | 3.641 |
| SRR9715742 | Root | 2.949 |
| SRR9715743 | Root | 3.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.921 |
| SRR8749028 | MeJA induced 9h | 3.821 |
| SRR8749029 | MeJA induced 9h | 1.170 |
| SRR8749030 | Uninduced | 1.082 |
| SRR8749031 | Uninduced | 0.733 |
| SRR8749032 | Uninduced | 0.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.436 |
| SRR8400027 | Control-Root | 4.595 |