Gene detail information of Glyur002556s00036568.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G70710.1 | 3.00E-118 | glycosyl hydrolase 9B1 |
| NR | XP_004516728.1 | 0 | PREDICTED: endoglucanase 8-like [Cicer arietinum] |
| COG | YP_002464713.1 | 6.00E-50 | glycoside hydrolase family protein [Chloroflexus aggregans DSM 9485] |
| Swissprot | tr|O49296|GUN4_ARATH | 1.00E-149 | Endoglucanase 4 (Precursor) |
| trEMBL | tr|A0A072UI31|A0A072UI31_MEDTR | 0 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02556 | 1073 | 9253 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002556s00036568.1 | PF00759.14 | Glyco_hydro_9 | 29 | 195 | 6.70E-63 |
| Glyur002556s00036568.1 | PF00759.14 | Glyco_hydro_9 | 320 | 558 | 3.40E-63 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.070 |
| SRR1783600 | control | 0.043 |
| SRR1783602 | moderate drought stress | 0.002 |
| SRR1811619 | moderate drought stress | 0.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.126 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.194 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.055 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.078 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.175 |
| SRR2967015 | Control (Tissue:root) | 0.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.035 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.098 |
| SRR8400027 | Control-Root | 0.165 |