Gene detail

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Gene detail information of Glyur002557s00031648.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G11980.1	2.00E-112	nudix hydrolase homolog 14
NR	AES90973.2	0	nudix hydrolase-like protein [Medicago truncatula]
COG	YP_001602761.1	5.00E-18	nucleoside diphosphate hydrolase [Gluconacetobacter diazotrophicus PAl 5]
Swissprot	tr\|Q9SZ63\|NUD14_ARATH	1.00E-139	Nudix hydrolase 14, chloroplastic (Precursor)
trEMBL	tr\|G7JK61\|G7JK61_MEDTR	0	Nudix hydrolase-like protein {ECO:0000313\|EMBL:AES90973.2}

Sequence

Transcript Sequence

>Glyur002557s00031648.2
AGGAAATGGTTGTTTTTCTTCTTCTTGCTGACGCCGAAGCTTAAGCTNCAATGGCTGTGGCTGTTCGCACTGTATCTGCTGCATTGAAAAGGTTCACTCCGTTCATCGCTCCCAATTGGACTTCGAAGAAGAAGGGTTTCTGCTGCAAAATGTCGACCGAGTCANCGCCACTGACTCACTGTATCACGCTGCCGAGTAAACAGTCCGAACCCGTTCACATTGTTGCTGCTCCCGGTGTCTCCCATTCTGATTTCTGGAGTGCTATTGATTCCTCTTTATTCAAGCAGTGGTTGCATAACTTGCAAACAGAGAATGGGGTTCTAGCCCATGGTACCATGACTCTGAGACAAGTTCTAATTCAGGGAGTAGACATGTTTGGAAAGCGCATTGGGTTTCTCAAGTTTGAAGCTGACATTTTTGACAAAGAAACGGGAAAAAAGGTTCCAGGTATTGTATTTGCTAGAGGACCAGCTGTGGCTGTGCTGATACTTCTGGAATCAGAGGGTGAGACTTATGCTGTTCTCACCGAACAGGCAAGAGTTCCTGTTGGAAGAATTATTTTGGAATTGCCTGCTGGAATGTTGGACGATGACAGGGGTGATATTGTTGGCACTGCAGTTCGTGAGGTTGAAGAAGAGACTGGCATCAAGTTAAATGTAGAAGACATGATTGACCTCACTGCGTTCCTGGACTCTTCAACTGGATGCAGAGTTTTCCCCTCTCCTGGAGGATGTGACGAAGAAATCAGTATCTTTCTGTATAGAGGACGTGTTGATAAAGAGATTATCACACATCTACAGGGTAAAGACACTGGCNTTCGTGAACACGGAGAGCTGATTAAGCTATGTGTAGTACCATACAAGAAACTTTGGCGGACAACAGCAGATTGTAAGGTTCTGGTGGCTGTTGCACTGTTAGAAAAAGCAAAGCAAGAAGGGCTGTTGCCTCCTTTGGCAACTTAATTGAGTAGCCTTTTTGGCTGGTAGTGCTACGAAGAGGAAAGACGAAACAAACTTTAAGAGAAATTGTTAGATAAATTTCTCAGAACGATTTATTGTAATTTTGACTTTTTATAAAGTCTAACCCTTTATCCGTGTGAGTTAAAAAAGAAAAACTCTTTATCTGTGTTGTACACCACCTACAAGAGGAGGCTTGGTTGTTATTGTTGCCTTTAGTACCGGTTGAAACTATCCTCAGCAATATTGTGTGTGACAAAGTCGCCATTGTTTTTAATTTTAATCACNAGATAGCATATGTAGCTAACATGGCTCACGCTTAGTATTACGGCGTTCTAAAGGCATGTTTACATAAAGGTCAAAGAACAAGTAGATTGTAGGATTTGTATGGCTTGTGATTTTGTTTTTATTTTTGGTACAATTGGGT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02557	18083	21794	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K18447	NUDX14	EC:3.6.1.21	Fructose and mannose metabolism	map00051
			Starch and sucrose metabolism	map00500
			Purine metabolism	map00230

Gene Ontology

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002557s00031648.2	PF00293.23	NUDIX	140	278	5.30E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.848
SRR1783600	control	4.984
SRR1783602	moderate drought stress	8.635
SRR1811619	moderate drought stress	8.582

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.311
DRR006520	Root Summer glycyrrhizin high producing strain	12.145
DRR006521	Root Winter glycyrrhizin high producing strain	10.852
DRR006522	Root Winter glycyrrhizin high producing strain	10.167
DRR006523	Root Summer glycyrrhizin low producing strain	9.885
DRR006524	Root Summer glycyrrhizin low producing strain	9.759
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.630
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.008

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	12.897
SRR2868004	Drought Stress(Tissue:root)	12.710
SRR2967015	Control (Tissue:root)	13.826

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	11.443
SRR9715740	Leave	18.880
SRR9715741	Leave	15.199
SRR9715739	Root	2.746
SRR9715742	Root	4.425
SRR9715743	Root	4.849

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.672
SRR8749028	MeJA induced 9h	11.550
SRR8749029	MeJA induced 9h	10.117
SRR8749030	Uninduced	9.218
SRR8749031	Uninduced	3.124
SRR8749032	Uninduced	3.938

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	15.202
SRR8400027	Control-Root	13.114