Gene detail

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Gene detail information of Glyur002562s00038059.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04220.1	8.00E-165	3-ketoacyl-CoA synthase 2
NR	AES88403.2	0	3-ketoacyl-CoA synthase-like protein [Medicago truncatula]
COG	YP_003086425.1	2.00E-17	Naringenin-chalcone synthase [Dyadobacter fermentans DSM 18053]
Swissprot	tr\|Q5XEP9\|KCS17_ARATH	0	3-ketoacyl-CoA synthase 17
trEMBL	tr\|G7JJR3\|G7JJR3_MEDTR	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}

Sequence

Transcript Sequence

>Glyur002562s00038059.1
CACCATTATGTCAGAAACACATCCTTNTATCTTTTTCCAAATCATCCATGNCCTTTGTTGTAGTATCCATGCTTTCTAGTATATATTCTAATTACACTACAAAGCTTTTCTATAAATAAGTATACACTTTGAGCAAGAAACTCTATCCTATCTATCCCACAATCCACATCATGAGAGAGCTTTTCATACCAATCCTATTCTTAGCTCTTGCCAAATCCTCTGCCCTCCCTTTGATTGAAAACTTCCTAGTTCACATTGTCAAGTTTAGTGTCTTTTCACTTTTACTATGGTGCGGCATAATAGCATCTATAGTAACCTTTTACCTCAAGATCTTCCCAAGAAAAATTTACCTAGTGGATTTTGCTTGTTACAAGCCTAATGATCCTGGATGCTATATTAGCAAGGAATTGTTCATGGAGTTACAAGCTGGAAGTGGGTATTTCAGAGAAGAGAGCTCAATTTTCTTGAAGAAAATCTTGGACAGGTCAGGGTTTGGTCAGAAGACTTATATGCCAAAGTCCTTAATGAAGCTCCCACTTGGTATTTGCATAGATGAGGCAAGGGATGAGGCAGAGTCTGTTGTTTTTGGTGTCATTGATGAGCTTTTGTTGAAGACAAAAGTTGATGTTAAGGATATTGGGATTATTATAACAAACTGCAGCATATTCAATCCTACACCTTCTTTGAGTGACATGGTTGTCAACCATTACAAGTTTAAGCAAGATGTTGTGAGCTATAATCTAAGTGGTATGGGTTGCAGTGCTGGACTTTTAGCCATAGACCTTGCCAAACAACTCCTACAGGTAAAACCCAACTCTTATGCCTTAGTAGTGAGCACTGAAAACATGACAAGTGCAGTATACAAGGGAAACAACAGGTCCATGCTTGTCTCCAATTGCTTATTCCGCTTAGGTGGTGCAGCAATCTTACTCTCCAACAATTCCTCTGACTCTCATCGTTCAAAATACCATCTCAAACACACAATCCGCACCAACAAAAGCTCACAAGACAGTTCCTACAATGCTGTCTTTCAGAAAGAGGATGATGAAACAGACAGAATCATAGGTGTTGCACTCTCCAAGGATCTCATGAGTGCTGCTGGTGATGTCCTCAAAGACAACATCTCAACACTTGGTAGACTTGTCCTACCACTATTTGAGAAGCTCAAGTTTGTGTCAATTTCAGTTTCCAAAAAGTACTTCAACAAAAGGTTGAAACTTTATACCCCAAATTTTAAGTTGGCTTTTGAGCATTTTTGCATTCATACTGGGGGCAAAGCTGTGGTGGATGAGTTGCAAAAAATACTTGAACTTAGTGATTGGCAATTGGAGCCTTCAAGGATGACACTTCATAGGTTTGGTAACACATCAAGTAGTTCTGTTTGGTATGTGTTGGCTTATTGCGAGGCTAAGGGCAGGATACGAAATGGTGACAGGATTTGGCAGATCGCGTTTGGGTCTGGGTTTAAGTGCAACAGTGTTGTCTTGCGTGCACTTAGGAACATTGATCCAGCTAAGGAGAGTAATCCTTGGAGTGATGAGATTCATGATTTTCCTGTTGTTGATATGTTTTAAATTGAATTCATGTGGGGTACTTTTGTTTTGTGTACCCTAAAACTATTATTCTAAGTGATTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02562	6044	8764	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15397	KCS	EC:2.3.1.199	Fatty acid elongation	map00062

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0008152 metabolic process

GO:0008610 lipid biosynthetic process

cellular_component GO:0016020 membrane molecular_function GO:0003824 catalytic activity GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002562s00038059.1	PF08392.7	FAE1_CUT1_RppA	56	342	2.70E-119
Glyur002562s00038059.1	PF08541.5	ACP_syn_III_C	361	440	5.20E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.201
SRR1783600	control	0.181
SRR1783602	moderate drought stress	0.399
SRR1811619	moderate drought stress	0.408

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.008
DRR006522	Root Winter glycyrrhizin high producing strain	0.066
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.626
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.893

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.000
SRR2868004	Drought Stress(Tissue:root)	0.029
SRR2967015	Control (Tissue:root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	14.642
SRR9715740	Leave	2.724
SRR9715741	Leave	4.601
SRR9715739	Root	0.152
SRR9715742	Root	0.396
SRR9715743	Root	0.667

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.693
SRR8400027	Control-Root	2.156