Gene detail information of Glyur002565s00043171.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G12310.1 | 3.00E-58 | RING/U-box superfamily protein |
| NR | XP_004513944.1 | 5.74E-123 | PREDICTED: uncharacterized protein LOC101496939 isoform X1 [Cicer arietinum] |
| trEMBL | tr|I1NDR0|I1NDR0_SOYBN | 3.00E-122 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G05050.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02565 | 8259 | 13839 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002565s00043171.1 | PF13639.1 | zf-RING_2 | 46 | 90 | 3.20E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.417 |
| SRR1783600 | control | 10.375 |
| SRR1783602 | moderate drought stress | 11.336 |
| SRR1811619 | moderate drought stress | 11.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.712 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.693 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.697 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.887 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.197 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.815 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.479 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 41.003 |
| SRR2868004 | Drought Stress(Tissue:root) | 43.234 |
| SRR2967015 | Control (Tissue:root) | 37.138 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 23.937 |
| SRR9715740 | Leave | 17.734 |
| SRR9715741 | Leave | 23.438 |
| SRR9715739 | Root | 15.424 |
| SRR9715742 | Root | 11.854 |
| SRR9715743 | Root | 13.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.957 |
| SRR8749028 | MeJA induced 9h | 9.049 |
| SRR8749029 | MeJA induced 9h | 8.386 |
| SRR8749030 | Uninduced | 28.214 |
| SRR8749031 | Uninduced | 28.551 |
| SRR8749032 | Uninduced | 24.747 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 37.082 |
| SRR8400027 | Control-Root | 43.931 |