Gene detail information of Glyur002578s00032750.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G23380.1 | 8.00E-104 | KNOTTED1-like homeobox gene 6 |
| NR | AGJ83725.1 | 0 | Knotted-1 homeobox protein [Caragana korshinskii] |
| Swissprot | tr|Q84JS6|KNAT6_ARATH | 1.00E-146 | Homeobox protein knotted-1-like 6 |
| trEMBL | tr|R9R650|R9R650_9FABA | 0 | Knotted-1 homeobox protein {ECO:0000313|EMBL:AGJ83725.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02578 | 21949 | 29658 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002578s00032750.1 | PF03790.8 | KNOX1 | 79 | 121 | 1.60E-24 |
| Glyur002578s00032750.1 | PF03791.8 | KNOX2 | 131 | 180 | 1.60E-27 |
| Glyur002578s00032750.1 | PF03789.8 | ELK | 218 | 239 | 3.90E-08 |
| Glyur002578s00032750.1 | PF05920.6 | Homeobox_KN | 258 | 297 | 7.60E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.479 |
| SRR1783600 | control | 3.660 |
| SRR1783602 | moderate drought stress | 7.108 |
| SRR1811619 | moderate drought stress | 6.962 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.452 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.196 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.270 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.212 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.336 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.452 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.076 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.279 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.497 |
| SRR2967015 | Control (Tissue:root) | 10.732 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 8.995 |
| SRR9715742 | Root | 14.605 |
| SRR9715743 | Root | 12.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.250 |
| SRR8749028 | MeJA induced 9h | 3.281 |
| SRR8749029 | MeJA induced 9h | 2.909 |
| SRR8749030 | Uninduced | 0.570 |
| SRR8749031 | Uninduced | 0.025 |
| SRR8749032 | Uninduced | 0.871 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.303 |
| SRR8400027 | Control-Root | 23.184 |