Gene detail

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Gene detail information of Glyur002584s00042058.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G09270.1	1.00E-58	glutathione S-transferase TAU 8
NR	KHN05112.1	2.21E-138	Putative glutathione S-transferase [Glycine soja]
COG	YP_007142062.1	6.00E-20	glutathione S-transferase [Crinalium epipsammum PCC 9333]
Swissprot	tr\|P32110\|GSTX6_SOYBN	9.00E-140	Probable glutathione S-transferase
trEMBL	tr\|I1KK57\|I1KK57_SOYBN	2.00E-138	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G16830.1}

Sequence

Transcript Sequence

>Glyur002584s00042058.1
AAATTATTAAATTGGCCTTTTCACTCTATAAAAAGGCAGAAACACCTTGGGACTCGCCGTGCCAATAGAAAAATACTTGATAGTTGTTTAAGCCAATTAAGAGAGTTGGAAGTGTTGCAATGGCTGCATCTGAGGGAGAGGTGAAACTTTTGGGAGTTGTGGGAAGCCCATTTGTGTGCAGGGTGCAGATTGCTCTCAAGTTGAAGGGAGTTGAATACAAATTTCTGGAAGAAAACTTGGGCAACAAGAGTGATCTGCTCCTCAAATATAACCCAGTTCATAAGAAGGTTCCTGTGTTTGTTCACAATGAGAAGCCCATCTCAGAGTCTCTTGTGATTGTTGAGTACATCGATGAGACATGGAAAAACAACCCAATCTTGCCCTCTGATCCTTACCAAAGAGCCTTGGCTCGTTTCTGGTCCAAGTTCATAGATGACAAGATCGTGAGTGCCGCATGGAAATCTGTTTTTACGGCCGATGAGAAAGAGCGTGAGAAGAATCTTGGAGAGTCATATGAGGCTATGCAGTTTCTTGAGAATGAGCTAAAGAGCAAGTTCTTTGGGGGAGAGGAGTTTGGCTTTGTGGATATTGCTGCTGTCTTCATAGCATTTTGGGTCCCTCTAATTCAAGAGATAGCTGGGTTGGAGTTGTTGACTAGTGAGAAGTTTCCCAAGCTTTACAAGTGGAGTCAAGAATTCCTTAACCACCCACTTATCAAAGAAACTCTGCCTCCTAGAGACCCACTTTTTGCCTTCTTCAAAGCTCGCTATGAGAACGTTGNTGCTCCAAAATAGATTGACATAGAGAGTGAGACTCAAGAGTTTCAAATCTTTCATTTAATTAGTTATTGTTGTTAAGATTTCATTTCAAAATAATATATGTAATCTGGGATTTCTCCTATGTGAAAGAAATCCAATGATATCTATTGTTGTCATATTTCAATTGATAAAAGAGAAAGGTATTCTTCTGCCCTTTCATAAATTCACACTCCTGATGGTTAAGAAAACTTGAAGCAGCAACAACCTTACAATATTGATTAAAACTTTTTGCAATGTCATGCA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02584	15125	16497	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00799	GST, gst	EC:2.5.1.18	Glutathione metabolism	map00480
			Metabolism of xenobiotics by cytochrome P450	map00980
			Drug metabolism - cytochrome P450	map00982
			Chemical carcinogenesis	map05204
			Fluid shear stress and atherosclerosis	map05418
			Platinum drug resistance	map01524

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002584s00042058.1	PF13417.1	GST_N_3	10	83	2.40E-16
Glyur002584s00042058.1	PF00043.20	GST_C	99	197	8.30E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.152
SRR1783600	control	4.980
SRR1783602	moderate drought stress	1.731
SRR1811619	moderate drought stress	1.892

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.611
DRR006520	Root Summer glycyrrhizin high producing strain	5.818
DRR006521	Root Winter glycyrrhizin high producing strain	1.720
DRR006522	Root Winter glycyrrhizin high producing strain	1.537
DRR006523	Root Summer glycyrrhizin low producing strain	38.760
DRR006524	Root Summer glycyrrhizin low producing strain	38.680
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.925
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.738

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	152.729
SRR2868004	Drought Stress(Tissue:root)	278.362
SRR2967015	Control (Tissue:root)	167.184

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	224.549
SRR9715740	Leave	334.807
SRR9715741	Leave	338.227
SRR9715739	Root	8.589
SRR9715742	Root	5.894
SRR9715743	Root	6.814

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	144.020
SRR8749028	MeJA induced 9h	154.463
SRR8749029	MeJA induced 9h	187.919
SRR8749030	Uninduced	408.272
SRR8749031	Uninduced	591.665
SRR8749032	Uninduced	220.068

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	37.782
SRR8400027	Control-Root	15.055