Gene detail information of Glyur002595s00035350.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G13440.14.00E-158glyceraldehyde-3-phosphate dehydrogenase C2
NRNP_001240046.10uncharacterized protein LOC100782924 [Glycine max]
COGYP_004042509.19.00E-165glyceraldehyde-3-phosphate dehydrogenase [Paludibacter propionicigenes WB4]
Swissprottr|P04796|G3PC_SINAL0Glyceraldehyde-3-phosphate dehydrogenase, cytosolic
trEMBLtr|C6TN36|C6TN36_SOYBN0Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold025957994143+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00134GAPDH, gapA EC:1.2.1.12 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Glycolysis / Gluconeogenesismap00010
Carbon fixation in photosynthetic organismsmap00710
HIF-1 signaling pathwaymap04066
Alzheimer's diseasemap05010


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016620  oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002595s00035350.1PF00044.19Gp_dh_N71571.50E-55
Glyur002595s00035350.1PF02800.15Gp_dh_C1622203.30E-25
Glyur002595s00035350.1PF02800.15Gp_dh_C2423412.60E-41


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control66.460
SRR1783600control65.681
SRR1783602moderate drought stress24.016
SRR1811619moderate drought stress23.769

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain130.147
DRR006520Root Summer glycyrrhizin high producing strain128.537
DRR006521Root Winter glycyrrhizin high producing strain306.222
DRR006522Root Winter glycyrrhizin high producing strain297.560
DRR006523Root Summer glycyrrhizin low producing strain87.922
DRR006524Root Summer glycyrrhizin low producing strain87.471
DRR006525Leaf Summer glycyrrhizin high producing strain27.059
DRR006526Leaf Summer glycyrrhizin high producing strain26.723

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)385.460
SRR2868004Drought Stress(Tissue:root)226.836
SRR2967015Control (Tissue:root)134.649

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave49.640
SRR9715740Leave34.802
SRR9715741Leave42.802
SRR9715739Root115.959
SRR9715742Root93.251
SRR9715743Root85.947

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h361.544
SRR8749028MeJA induced 9h447.701
SRR8749029MeJA induced 9h571.719
SRR8749030Uninduced631.272
SRR8749031Uninduced593.795
SRR8749032Uninduced846.656

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root150.921
SRR8400027Control-Root174.642

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved