Gene detail information of Glyur002595s00035358.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G12910.10Transducin/WD40 repeat-like superfamily protein
NRXP_007161787.10hypothetical protein PHAVU_001G098000g [Phaseolus vulgaris]
COGYP_007036119.12.00E-10hypothetical protein BN6_19260 [Saccharothrix espanaensis DSM 44229]
Swissprottr|Q9LPV9|LWD1_ARATH0WD repeat-containing protein LWD1
trEMBLtr|V7CY08|V7CY08_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW33781.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold025953042131482-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002595s00035358.1PF00400.27WD401792120.00018
Glyur002595s00035358.1PF00400.27WD402663031.00E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control34.464
SRR1783600control35.331
SRR1783602moderate drought stress28.374
SRR1811619moderate drought stress28.391

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.168
DRR006520Root Summer glycyrrhizin high producing strain29.220
DRR006521Root Winter glycyrrhizin high producing strain9.916
DRR006522Root Winter glycyrrhizin high producing strain9.935
DRR006523Root Summer glycyrrhizin low producing strain32.036
DRR006524Root Summer glycyrrhizin low producing strain32.481
DRR006525Leaf Summer glycyrrhizin high producing strain30.701
DRR006526Leaf Summer glycyrrhizin high producing strain28.391

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)30.681
SRR2868004Drought Stress(Tissue:root)36.353
SRR2967015Control (Tissue:root)38.146

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave37.137
SRR9715740Leave39.660
SRR9715741Leave35.764
SRR9715739Root30.266
SRR9715742Root24.882
SRR9715743Root24.272

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h56.661
SRR8749028MeJA induced 9h36.631
SRR8749029MeJA induced 9h27.934
SRR8749030Uninduced18.647
SRR8749031Uninduced19.126
SRR8749032Uninduced16.134

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.162
SRR8400027Control-Root26.823

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved