Gene detail information of Glyur002611s00042328.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G25630.12.00E-55fibrillarin 2
NRXP_007137861.18.19E-73hypothetical protein PHAVU_009G161800g [Phaseolus vulgaris]
COGYP_008796772.13.00E-27fibrillarin-like pre-rRNA processing protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|Q94AH9|MD36A_ARATH5.00E-71Mediator of RNA polymerase II transcription subunit 36a
trEMBLtr|V7AX24|V7AX24_PHAVU3.00E-73Uncharacterized protein {ECO:0000313|EMBL:ESW09855.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0261155089372-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14563NOP1, FBL EC:2.1.1.- Ribosome biogenesis in eukaryotes map03008


Gene Ontology

biological_process

GO:0006364  rRNA processing

GO:0008033  tRNA processing


molecular_function

GO:0003723  RNA binding

GO:0008168  methyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002611s00042328.1PF01269.12Fibrillarin761851.20E-48


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control33.382
SRR1783600control33.161
SRR1783602moderate drought stress38.027
SRR1811619moderate drought stress37.170

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain53.118
DRR006520Root Summer glycyrrhizin high producing strain50.074
DRR006521Root Winter glycyrrhizin high producing strain22.561
DRR006522Root Winter glycyrrhizin high producing strain20.567
DRR006523Root Summer glycyrrhizin low producing strain61.069
DRR006524Root Summer glycyrrhizin low producing strain60.178
DRR006525Leaf Summer glycyrrhizin high producing strain17.773
DRR006526Leaf Summer glycyrrhizin high producing strain16.192

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)139.628
SRR2868004Drought Stress(Tissue:root)77.171
SRR2967015Control (Tissue:root)83.165

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.170
SRR9715740Leave20.326
SRR9715741Leave15.364
SRR9715739Root60.614
SRR9715742Root59.694
SRR9715743Root51.854

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h89.806
SRR8749028MeJA induced 9h41.445
SRR8749029MeJA induced 9h39.924
SRR8749030Uninduced3.313
SRR8749031Uninduced4.000
SRR8749032Uninduced8.479

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root48.247
SRR8400027Control-Root36.395

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved