Gene detail information of Glyur002638s00042496.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G25700.12.00E-95beta-hydroxylase 1
NRKEH26249.15.22E-147beta-carotene hydroxylase [Medicago truncatula]
COGYP_008147268.11.00E-27hypothetical protein SCE1572_04045 [Sorangium cellulosum So0157-2]
Swissprottr|Q9SZZ8|BCH1_ARATH6.00E-138Beta-carotene 3-hydroxylase 1, chloroplastic (Precursor)
trEMBLtr|A0A072U8Y2|A0A072U8Y2_MEDTR2.00E-147Beta-carotene hydroxylase {ECO:0000313|EMBL:KEH26249.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold02638980913578+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15746crtZ EC:1.14.13.129 Carotenoid biosynthesis map00906


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005506  iron ion binding

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002638s00042496.1PF04116.8FA_hydroxylase1532661.20E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.476
SRR1783600control10.481
SRR1783602moderate drought stress16.119
SRR1811619moderate drought stress16.251

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain56.612
DRR006520Root Summer glycyrrhizin high producing strain55.854
DRR006521Root Winter glycyrrhizin high producing strain10.990
DRR006522Root Winter glycyrrhizin high producing strain10.703
DRR006523Root Summer glycyrrhizin low producing strain61.253
DRR006524Root Summer glycyrrhizin low producing strain60.292
DRR006525Leaf Summer glycyrrhizin high producing strain26.528
DRR006526Leaf Summer glycyrrhizin high producing strain25.227

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.815
SRR2868004Drought Stress(Tissue:root)35.390
SRR2967015Control (Tissue:root)30.705

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave32.689
SRR9715740Leave34.774
SRR9715741Leave23.060
SRR9715739Root18.337
SRR9715742Root46.378
SRR9715743Root43.716

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.971
SRR8749028MeJA induced 9h7.837
SRR8749029MeJA induced 9h3.383
SRR8749030Uninduced2.936
SRR8749031Uninduced0.000
SRR8749032Uninduced0.996

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root38.159
SRR8400027Control-Root28.511

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved