Gene detail information of Glyur002652s00039337.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26810.1 | 0 | auxin signaling F-box 2 |
| NR | XP_007161649.1 | 0 | hypothetical protein PHAVU_001G087000g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LPW7|AFB3_ARATH | 0 | Protein AUXIN SIGNALING F-BOX 3 |
| trEMBL | tr|V7CWC2|V7CWC2_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW33643.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02652 | 4856 | 8382 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002652s00039337.1 | PF12937.2 | F-box-like | 3 | 35 | 5.50E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 63.913 |
| SRR1783600 | control | 64.428 |
| SRR1783602 | moderate drought stress | 100.696 |
| SRR1811619 | moderate drought stress | 99.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 70.024 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 68.854 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.825 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.653 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 57.266 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 57.324 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.935 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 32.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 92.790 |
| SRR2868004 | Drought Stress(Tissue:root) | 111.086 |
| SRR2967015 | Control (Tissue:root) | 132.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 49.851 |
| SRR9715740 | Leave | 59.576 |
| SRR9715741 | Leave | 56.642 |
| SRR9715739 | Root | 114.883 |
| SRR9715742 | Root | 85.075 |
| SRR9715743 | Root | 92.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 95.316 |
| SRR8749028 | MeJA induced 9h | 47.517 |
| SRR8749029 | MeJA induced 9h | 32.301 |
| SRR8749030 | Uninduced | 8.686 |
| SRR8749031 | Uninduced | 3.592 |
| SRR8749032 | Uninduced | 6.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 121.663 |
| SRR8400027 | Control-Root | 112.428 |