Gene detail information of Glyur002654s00036079.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G27430.14.00E-77Signal peptidase subunit
NRKHN04010.15.77E-109Signal peptidase complex subunit 3B [Glycine soja]
Swissprottr|Q53YF3|SPC3B_ARATH2.00E-97Signal peptidase complex subunit 3B
trEMBLtr|I1NC08|I1NC08_SOYBN3.00E-110Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G42480.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold026542387231993+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12948SPCS3, SPC3 EC:3.4.-.- Protein export map03060


Gene Ontology

biological_process

GO:0006465  signal peptide processing


cellular_component

GO:0005787  signal peptidase complex

GO:0016021  integral component of membrane


molecular_function

GO:0008233  peptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002654s00036079.1PF04573.7SPC2211551.80E-57
Glyur002654s00036079.1PF04573.7SPC221551951.70E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control39.984
SRR1783600control42.372
SRR1783602moderate drought stress30.723
SRR1811619moderate drought stress31.838

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain41.934
DRR006520Root Summer glycyrrhizin high producing strain41.563
DRR006521Root Winter glycyrrhizin high producing strain21.749
DRR006522Root Winter glycyrrhizin high producing strain20.202
DRR006523Root Summer glycyrrhizin low producing strain39.070
DRR006524Root Summer glycyrrhizin low producing strain41.126
DRR006525Leaf Summer glycyrrhizin high producing strain18.909
DRR006526Leaf Summer glycyrrhizin high producing strain18.912

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.640
SRR2868004Drought Stress(Tissue:root)16.961
SRR2967015Control (Tissue:root)18.364

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.075
SRR9715740Leave18.549
SRR9715741Leave12.819
SRR9715739Root28.189
SRR9715742Root19.332
SRR9715743Root22.507

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.151
SRR8749028MeJA induced 9h13.912
SRR8749029MeJA induced 9h18.479
SRR8749030Uninduced5.010
SRR8749031Uninduced2.532
SRR8749032Uninduced2.589

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.164
SRR8400027Control-Root20.608

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved