Gene detail information of Glyur002655s00040013.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14410.1 | 5.00E-87 | ssDNA-binding transcriptional regulator |
| NR | AFK42652.1 | 6.33E-141 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9M9S3|WHY1_ARATH | 3.00E-109 | Single-stranded DNA-binding protein WHY1, chloroplastic (Precursor) |
| trEMBL | tr|I3SQW0|I3SQW0_LOTJA | 2.00E-141 | Uncharacterized protein {ECO:0000313|EMBL:AFK42652.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02655 | 23237 | 26557 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Whirly |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002655s00040013.1 | PF08536.6 | Whirly | 86 | 224 | 5.40E-62 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 42.250 |
| SRR1783600 | control | 42.029 |
| SRR1783602 | moderate drought stress | 28.318 |
| SRR1811619 | moderate drought stress | 27.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 45.662 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 44.478 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.909 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.462 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 35.366 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.239 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 47.004 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 47.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.266 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.329 |
| SRR2967015 | Control (Tissue:root) | 16.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 27.215 |
| SRR9715740 | Leave | 54.090 |
| SRR9715741 | Leave | 32.783 |
| SRR9715739 | Root | 19.456 |
| SRR9715742 | Root | 21.252 |
| SRR9715743 | Root | 20.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.580 |
| SRR8749028 | MeJA induced 9h | 5.909 |
| SRR8749029 | MeJA induced 9h | 7.949 |
| SRR8749030 | Uninduced | 1.705 |
| SRR8749031 | Uninduced | 0.685 |
| SRR8749032 | Uninduced | 1.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 38.447 |
| SRR8400027 | Control-Root | 38.741 |