Gene detail information of Glyur002665s00038740.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13710.27.00E-145sterol methyltransferase 1
NRXP_007131415.10hypothetical protein PHAVU_011G011800g [Phaseolus vulgaris]
COGYP_001277818.13.00E-27type 11 methyltransferase [Roseiflexus sp. RS-1]
Swissprottr|Q9LM02|SMT1_ARATH0Cycloartenol-C-24-methyltransferase
trEMBLtr|V7AD53|V7AD53_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW03409.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold026651908623833+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00559E2.1.1.41, SMT1, ERG6 EC:2.1.1.41 Steroid biosynthesis map00100


Gene Ontology

biological_process

GO:0006694  steroid biosynthetic process

GO:0008152  metabolic process


molecular_function

GO:0008168  methyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002665s00038740.1PF08241.7Methyltransf_11991957.80E-20
Glyur002665s00038740.1PF08498.5Sterol_MT_C2462932.40E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.029
SRR1783600control8.178
SRR1783602moderate drought stress8.046
SRR1811619moderate drought stress8.135

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.410
DRR006520Root Summer glycyrrhizin high producing strain26.607
DRR006521Root Winter glycyrrhizin high producing strain3.724
DRR006522Root Winter glycyrrhizin high producing strain3.876
DRR006523Root Summer glycyrrhizin low producing strain13.883
DRR006524Root Summer glycyrrhizin low producing strain14.022
DRR006525Leaf Summer glycyrrhizin high producing strain12.905
DRR006526Leaf Summer glycyrrhizin high producing strain13.104

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)46.875
SRR2868004Drought Stress(Tissue:root)24.091
SRR2967015Control (Tissue:root)21.352

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.766
SRR9715740Leave1.807
SRR9715741Leave2.757
SRR9715739Root11.695
SRR9715742Root15.790
SRR9715743Root13.799

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.288
SRR8749028MeJA induced 9h6.939
SRR8749029MeJA induced 9h11.684
SRR8749030Uninduced1.609
SRR8749031Uninduced0.683
SRR8749032Uninduced2.132

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.970
SRR8400027Control-Root29.178

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved