Gene detail

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Gene detail information of Glyur002666s00040269.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G43800.1	9.00E-121	Plant stearoyl-acyl-carrier-protein desaturase family protein
NR	XP_003602146.1	1.95E-164	Stearoyl acyl carrier protein desaturase [Medicago truncatula]
COG	YP_006369323.1	2.00E-21	Fatty acid desaturase [Modestobacter marinus]
Swissprot	tr\|Q84VY3\|STAD6_ARATH	7.00E-149	Acyl-[acyl-carrier-protein] desaturase 6, chloroplastic (Precursor)
trEMBL	tr\|G7J653\|G7J653_MEDTR	7.00E-165	Acyl-[acyl-carrier-protein] desaturase {ECO:0000256\|RuleBase:RU000582}

Sequence

Transcript Sequence

>Glyur002666s00040269.1
ATGTCAATGTCAATTTGCACACAAGGGGTAGTAGCACTTGCATGGACCCCAACCCGTGGTCACCTGAAGGCCCAATCCAAAACAGCCGACCCAAGAGCCAAAAAGTCACACTCAATGCCATTGGAGAAAAGAGAAATTTTCAAGTCATTGGAGAAATGGGCATCGCAAAATGTGCTGCCACTAATCAAACCAGTGAAGGCCCTGCGAGATCGAACAGCAGAGCTTCCAGATGATTACTTGGTGGTTTTGGTGGCATTGCCATCATACCAAACATGGATAAACAAGCTTGATGGGGTTGGGGATGAAACTGGTTCATGCAACACCCCATGGGCTATATGGTCACGCTCTTGGACTGCTGAGGAGAATAGGCATGGGGATTTGCTCAAAACTTATCTCTACCTCTCGGGTAGGGATTTTGGATCAGAAAACAACCCATACATGGGCTTTGTGTACACGTCCTTCCAAGAGCGAGCCACTTTTGTGGCACACGGCAACACGGCTCGGTTGGCTAAGGAGAGTGGTGATCCAGTGCTTGCACGCATATGCGGCACCATTGCTGCAGACGAGAAGCGGCACGAGACTGCATACGTGAGGATTGTGGAGAAGCTTCTAGAAGTGGACCCCACAGAGGCGATGATTGCCATAGCAGACATGATGCGCCGCAAAATCACAATGCCCGCATGCTTGATGCAAGATGGGCGAGACCCACACCTTTTCCACCATTTCTCTGTAGTGACGCAACGTGTCGGTGTGTACACGGCTAGTGACTATGCTGACATCTTAGAGTTCTTGATCGAACGGTGGAGATTGGAGAAGCTAGAGGGTTTGACGAGCGAGGGAAAGTGTGCACAGGAGTTTGTGTGTGGGCTTGCACCTAGGATTAGGAGGCTGCAGGAGCATGCCAACGAGCGAGTGCGTAAGATAAATGTTAAGTTTAGCTGGATCTTCAATAAAGAGAGCAATGTTGGCTATGTAAGGAACAACAGTGGCTTCAAGACAAGTAATGTAATGCTTGTTGCAAGTGTTGAAGGACAAGAACCTGGTCCTCAAGAGAAGTTTGAGTCAGCGGAGGATGATGCTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02666	28008	31495	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03921	FAB2, SSI2, desA1	EC:1.14.19.2 1.14.19.11 1.14.19.26	Fatty acid metabolism	map01212
			Fatty acid biosynthesis	map00061
			Biosynthesis of unsaturated fatty acids	map01040

Gene Ontology

biological_process

GO:0006631 fatty acid metabolic process

GO:0055114 oxidation-reduction process

molecular_function GO:0016491 oxidoreductase activity GO:0045300 acyl-[acyl-carrier-protein] desaturase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002666s00040269.1	PF03405.9	FA_desaturase_2	65	319	9.40E-117

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.278
SRR1783600	control	0.271
SRR1783602	moderate drought stress	0.088
SRR1811619	moderate drought stress	0.105

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.050
DRR006520	Root Summer glycyrrhizin high producing strain	0.098
DRR006521	Root Winter glycyrrhizin high producing strain	0.056
DRR006522	Root Winter glycyrrhizin high producing strain	0.056
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.051
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.549
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.111

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.477
SRR2868004	Drought Stress(Tissue:root)	0.028
SRR2967015	Control (Tissue:root)	0.017

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.798
SRR9715740	Leave	0.617
SRR9715741	Leave	0.000
SRR9715739	Root	0.046
SRR9715742	Root	0.717
SRR9715743	Root	0.953

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.849
SRR8749028	MeJA induced 9h	3.410
SRR8749029	MeJA induced 9h	1.547
SRR8749030	Uninduced	0.584
SRR8749031	Uninduced	6.390
SRR8749032	Uninduced	7.549

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.036
SRR8400027	Control-Root	1.414