Gene detail information of Glyur002666s00040270.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT1G77120.1 | 2.00E-115 | alcohol dehydrogenase 1 |
NR | XP_003602129.1 | 2.15E-178 | Alcohol dehydrogenase [Medicago truncatula] |
COG | NP_967848.1 | 5.00E-89 | alcohol dehydrogenase / formaldehyde dehydrogenase [Bdellovibrio bacteriovorus HD100] |
Swissprot | tr|P12886|ADH1_PEA | 5.00E-180 | Alcohol dehydrogenase 1 |
trEMBL | tr|G7J5M6|G7J5M6_MEDTR | 8.00E-179 | Zinc-binding alcohol dehydrogenase family protein {ECO:0000313|EMBL:AES72380.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold02666 | 31636 | 33937 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K18857 | ADH1 | EC:1.1.1.1 | Glycolysis / Gluconeogenesis | map00010 |
Fatty acid degradation | map00071 | |||
alpha-Linolenic acid metabolism | map00592 | |||
Tyrosine metabolism | map00350 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur002666s00040270.1 | PF00107.21 | ADH_zinc_N | 94 | 218 | 2.10E-24 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 115.525 |
SRR1783600 | control | 116.849 |
SRR1783602 | moderate drought stress | 47.631 |
SRR1811619 | moderate drought stress | 46.382 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 155.869 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 155.842 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 721.327 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 693.731 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 393.385 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 393.320 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.103 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.989 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 134.522 |
SRR2868004 | Drought Stress(Tissue:root) | 128.949 |
SRR2967015 | Control (Tissue:root) | 147.672 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 33.707 |
SRR9715740 | Leave | 31.828 |
SRR9715741 | Leave | 40.146 |
SRR9715739 | Root | 363.181 |
SRR9715742 | Root | 174.749 |
SRR9715743 | Root | 213.688 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 1245.053 |
SRR8749028 | MeJA induced 9h | 1290.206 |
SRR8749029 | MeJA induced 9h | 2444.351 |
SRR8749030 | Uninduced | 1741.198 |
SRR8749031 | Uninduced | 3648.185 |
SRR8749032 | Uninduced | 3855.098 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 293.805 |
SRR8400027 | Control-Root | 255.688 |