Gene detail information of Glyur002668s00041921.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRATCG01050.10NADH-Ubiquinone/plastoquinone (complex I) protein
NRXP_003621689.10Photosystem I iron-sulfur center [Medicago truncatula]
COGYP_007113982.10NADH dehydrogenase subunit M [Oscillatoria nigro-viridis PCC 7112]
Swissprottr|Q2PMN2|NU4C_SOYBN0NAD(P)H-quinone oxidoreductase chain 4, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00491}
trEMBLtr|G7KTU3|G7KTU3_MEDTR0NAD(P)H-quinone oxidoreductase chain 4 {ECO:0000313|EMBL:AES77907.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold026682961731486-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05575ndhD EC:1.6.5.3 Oxidative phosphorylation map00190


Gene Ontology

biological_process

GO:0009773  photosynthetic electron transport in photosystem I

GO:0015979  photosynthesis

GO:0042773  ATP synthesis coupled electron transport

GO:0055114  oxidation-reduction process


cellular_component

GO:0009522  photosystem I

GO:0042651  thylakoid membrane


molecular_function

GO:0008137  NADH dehydrogenase (ubiquinone) activity

GO:0009055  electron carrier activity

GO:0016655  oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

GO:0051536  iron-sulfur cluster binding

GO:0051539  4 iron, 4 sulfur cluster binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002668s00041921.1PF14697.1Fer4_219614.20E-09
Glyur002668s00041921.1PF00361.15Oxidored_q12194912.10E-71


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.860
SRR1783600control9.226
SRR1783602moderate drought stress9.875
SRR1811619moderate drought stress9.728

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.309
DRR006520Root Summer glycyrrhizin high producing strain4.477
DRR006521Root Winter glycyrrhizin high producing strain2.303
DRR006522Root Winter glycyrrhizin high producing strain2.413
DRR006523Root Summer glycyrrhizin low producing strain6.806
DRR006524Root Summer glycyrrhizin low producing strain6.815
DRR006525Leaf Summer glycyrrhizin high producing strain19.882
DRR006526Leaf Summer glycyrrhizin high producing strain20.460

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.580
SRR2868004Drought Stress(Tissue:root)0.395
SRR2967015Control (Tissue:root)0.369

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.697
SRR9715740Leave4.715
SRR9715741Leave7.367
SRR9715739Root8.565
SRR9715742Root1.892
SRR9715743Root4.339

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.836
SRR8749028MeJA induced 9h0.707
SRR8749029MeJA induced 9h0.474
SRR8749030Uninduced0.445
SRR8749031Uninduced0.812
SRR8749032Uninduced0.606

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.199
SRR8400027Control-Root0.208

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved