Gene detail information of Glyur002668s00041922.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRATCG01080.11.00E-56NADH:ubiquinone/plastoquinone oxidoreductase, chain 6
NRXP_003604160.14.75E-178NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
COGYP_007102314.11.00E-34NADH dehydrogenase subunit J [Pseudanabaena sp. PCC 7367]
Swissprottr|B5LMS3|NU6C_CICAR8.00E-116NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic
trEMBLtr|G7JVM0|G7JVM0_MEDTR2.00E-178NADH-ubiquinone/plastoquinone oxidoreductase chain 6 {ECO:0000313|EMBL:AES86357.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold026683178632847-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05578ndhG EC:1.6.5.3 Oxidative phosphorylation map00190


Gene Ontology

biological_process

GO:0042773  ATP synthesis coupled electron transport

GO:0055114  oxidation-reduction process


molecular_function

GO:0008137  NADH dehydrogenase (ubiquinone) activity

GO:0016651  oxidoreductase activity, acting on NAD(P)H


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002668s00041922.1PF00499.15Oxidored_q3211731.10E-17
Glyur002668s00041922.1PF00420.19Oxidored_q21852791.10E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.248
SRR1783600control16.300
SRR1783602moderate drought stress14.196
SRR1811619moderate drought stress14.318

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.458
DRR006520Root Summer glycyrrhizin high producing strain8.764
DRR006521Root Winter glycyrrhizin high producing strain5.702
DRR006522Root Winter glycyrrhizin high producing strain5.949
DRR006523Root Summer glycyrrhizin low producing strain18.594
DRR006524Root Summer glycyrrhizin low producing strain16.907
DRR006525Leaf Summer glycyrrhizin high producing strain42.472
DRR006526Leaf Summer glycyrrhizin high producing strain42.141

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.912
SRR2868004Drought Stress(Tissue:root)0.295
SRR2967015Control (Tissue:root)0.608

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.123
SRR9715740Leave7.857
SRR9715741Leave13.438
SRR9715739Root11.512
SRR9715742Root1.608
SRR9715743Root3.801

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.483
SRR8749028MeJA induced 9h1.109
SRR8749029MeJA induced 9h0.691
SRR8749030Uninduced0.519
SRR8749031Uninduced0.326
SRR8749032Uninduced0.414

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.622
SRR8400027Control-Root0.474

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved