Gene detail

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Gene detail information of Glyur002672s00042427.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47570.1	0	Leucine-rich repeat protein kinase family protein
NR	KHN26607.1	0	Putative LRR receptor-like serine/threonine-protein kinase [Glycine soja]
COG	YP_004775215.1	1.00E-48	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|I1L148\|I1L148_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G05550.1}

Sequence

Transcript Sequence

>Glyur002672s00042427.1
ATGCACCAAAGAGTTACAGAGTTGAACTTATCAGGATATCATTTGCATGGATCCTTGTCTCCCCATGTTGGCAATCTCTCTTTTATGAGAAAACTCTATCTTTCAGACAACAGCTTCTTTGGAAAAATCCCACAGGAGCTGGGTCAGTTGTTACGATTGCGTCAACTCAGTTTGGCCAATAATTCATTCGAAGGGAAGATTCCGACAAACCTGACAAATTGCTCCATTCTTAGAGTCTTATACTTGCCTTGGAACAGTCTGAATGGCAAGATACCAATTGAATTTGGCTCTCTTCAAAAGCTTGAAGTATTTAGCATTCGGAGAAACAATTTAACCGGAGGAGTACCACCATTCATAGGGAATCTTTCATCCTTAACAAGTCTTGATGTTGCTTTTAACAACTTAAAGGGAGATATACCACAAGAATTATGTCTCCTCAAGAACTTGACAAAGATAGTAGTGGATGTCAACAAACTATCTGGTACAATTCCTACTTGTCTTTACAATGTGACATCTCTTAATATGATCTCAGCTGTAATGAATTACTTTGAAGGCTCTCTTCCAACCAACATGTTCCAAACCCTCCCCAATCTCCAATTTTTTGCAATTGGCGGGAATCAAATCTTAGGTCCAATCCCTCCTTCCGTTGCAAATGCTTCTACCCTTGAACAACTTGAAATATCTCAAAACCATTTCAACGGACAAGTCCCAAGTCTAGGGAAGCTACCACATCTTCAGTGGCTAAGTATGCACTCAAACAATCTAGGTGACAACTCAACTACGGATTTGGAGATGTTAACATCATTGACAAACTGTAGTAAGTTGGATGTGCTCGCCATGTCTTACAATAATTTTGGAGGCCATTTACCAAAATCGGTGGGAAATTTGTCCACCCAACTCAGTCAACTTTATCTTGGGGAAAATCATATATCAGGGCAAATTCCTATTGAATTTGGAAATTTAATTAGCTTAATTCTCCTAACCATGGAAAATAACTATTTGGAAGGGATGATTCCAACAACTTTTGCGAAGCTTCAGAAGATGCAAGAGTTAGATTTGAGTGGAAACAAACTTTCAGGAGATGTACCACCCTCCATAGGCAACCTTAGTTGGTTGTATTATTTGGGTATAGGAGACAATGTGTTTGGAGGTAGTATTCCTCCAAACATAGGGAAATGCCAAAAGTTACAATATCTAAACCTTTCACAAAACAACCTTAAAGGAGACATACCCGCAGAGGTTTTTAGTCTTCCATCTTTAACAGTGGGGCTAGACTTATCAAAAAACTCACTGAGTGGCAATCTACTTAAGGAAGTGGGCCAATTACAAAATATTGGGCAGTTTGATGTCTCTGAAAATCGTCTGTCTGGTGAAATTCCTGGAACCATTGGAGAATGCACAAGCTTAGAGTCTCTTTATTTGCAAGGGAATCTCTTTCGTGGAGCCATACCATCTTCTTTGGCTTTGCTCAAAGGCCTTCAACATTTAGACCTATCACGAAATAACTTATCAGGATCAATTCCTAAAGGTCTACAAAATATTTCGTTTCTAGAATACTTCAATGTATCTTTCAACATGTTGGACGGCGAGGTGCCAACTGAAGGTGTCTTTGGAAATGCAAGTGGGTTAGCAATAGCAGGAAACAATAACCTTTGCGGGGGTATTTCAGAGTTGCATCTACCGCCATGCCCTGTCAAAGGTATGAAACCAGCAAAACACCATAATTTCAGGTTGATAGCGGTGATAGTTAGTGTGGTTGCTTTTCTTCTCATATTGCTATTTTTTCTAACTATCTTCTGGATGAGGAAAAGAAACAAGAAACCATATTCTGATTCACCAACAATTAAACAACTGGCTAAGGTTTCATATCAAAGCCTCCACAACGGAACTGATGGGTTCTCAACTAGAAACTTGATGGGTTCTGGAAATTTTGGCTCTGTCTACAGAGGAACTCTTGACTCAAAAGATAGAGTTGTTGTCATAAAGGTCCTAAACCTTCAAAAGAAAGGAGCTCAAAAGAGTTTTATTGCCGAATGCAATGCACTAAAAAATGTTAGACATCGAAATCTAGTTAAGATTTTAACATGTTGTTCCAGTACAGATTACAAAGGTCAAAAATTCAAAGCTCTAGTTTTTGAGTACATGGAGAATGGAAGCTTAGAACAATGGCTGCATCCAAGGACAAGAAGTGTGGAGGAGCTTCCTAAAGCATTGAACCTTGATCAAAGGTTAAGTATCATTATCGATGTTGCTTCTGCATTACATTATCTGCATCATGAATGTGACCAATTGGTCCTTCATTGTGATCTGAAGCCAAGCAATGTCCTTCTTGACGATGACATGGTTGCACATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAACCATCGACGGTACCTCTCATAAGGAACCTAGTGGAAGTACAATTGGAATAAAAGGGACTATTGGCTATGCTCCTCCAGAGTATGGATTGGGTTCTCAAGTGTCCACATATGGTGACATGTATAGCTTTGGGATGCTTCTGTTGGAAATGCTTACCGGAAGAAGACCCACTGATGAAATGTTTGAAGAGGGTCAAAATCTGTATAAGTTTGTTGAAATCTCATTTCCTGATAATCTTGTACATGTTTTAGACCCACATCTTGTACCAAGAGATGAAGAAGCAGCAATAGAAGATGGAAACAGTGGGAATCTTATTCCAACTGTAGAGAAGTGCTTAGTTTCACTTTTTGGGATTGGTCTTGCTTGTTCAATGGAATCAACGAAAGAAAGAATGAATATAGTGGATGTCACAAGAGAGCTAAACATAATCAAAAAGGCGTTTCTCACAGGTGATGTACATTGAGAATTTTAGATGCTTATTTGGCTCTTAATTGACTAATTGTTCATGTAGTTATACTTTCATTTTCTGCCATCATTGGCCATTGCTTTGTATTTCAAAATTCATAGACTACAACATACAAAGATAATGAGCTTTTTCTCGAATTTCAGGTGTCCGCCCTCGTGAGTAATTATAGATGAAATAAAATTCTGCGGTCATTTGGGAATGAAACGTGTATTCTGTATGAAGTAGTGCCACAAGAGTAAAACCGCAGAGCAGAGTTTTTTGATAAAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02672	4186	7428	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002672s00042427.1	PF13516.1	LRR_6	122	144	0.47
Glyur002672s00042427.1	PF00560.28	LRR_1	348	369	0.02
Glyur002672s00042427.1	PF00560.28	LRR_1	395	416	0.017
Glyur002672s00042427.1	PF13855.1	LRR_8	467	527	4.80E-07
Glyur002672s00042427.1	PF00069.20	Pkinase	636	866	4.10E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.156
SRR1783600	control	0.158
SRR1783602	moderate drought stress	0.485
SRR1811619	moderate drought stress	0.480

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.662
DRR006520	Root Summer glycyrrhizin high producing strain	1.672
DRR006521	Root Winter glycyrrhizin high producing strain	0.447
DRR006522	Root Winter glycyrrhizin high producing strain	0.472
DRR006523	Root Summer glycyrrhizin low producing strain	1.394
DRR006524	Root Summer glycyrrhizin low producing strain	1.254
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.895
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.921

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.269
SRR2868004	Drought Stress(Tissue:root)	0.821
SRR2967015	Control (Tissue:root)	1.210

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.573
SRR9715740	Leave	0.972
SRR9715741	Leave	1.227
SRR9715739	Root	0.055
SRR9715742	Root	1.758
SRR9715743	Root	1.227

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.399
SRR8400027	Control-Root	0.421