Gene detail information of Glyur002688s00042246.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G11840.1 | 3.00E-87 | plant U-box 24 |
| NR | KEH41885.1 | 0 | E3 ubiquitin-protein ligase PUB23-like protein [Medicago truncatula] |
| COG | YP_001957949.1 | 2.00E-08 | hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q9SF15|PUB24_ARATH | 3.00E-111 | E3 ubiquitin-protein ligase PUB24 |
| trEMBL | tr|A0A072VUZ2|A0A072VUZ2_MEDTR | 0 | E3 ubiquitin-protein ligase PUB23-like protein {ECO:0000313|EMBL:KEH41885.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02688 | 13904 | 15139 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002688s00042246.1 | PF04564.10 | U-box | 7 | 79 | 1.90E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.030 |
| SRR1783600 | control | 0.030 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.928 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.856 |
| SRR2967015 | Control (Tissue:root) | 0.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.497 |
| SRR9715740 | Leave | 0.102 |
| SRR9715741 | Leave | 0.501 |
| SRR9715739 | Root | 0.201 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.526 |
| SRR8749028 | MeJA induced 9h | 1.231 |
| SRR8749029 | MeJA induced 9h | 0.217 |
| SRR8749030 | Uninduced | 1.964 |
| SRR8749031 | Uninduced | 0.796 |
| SRR8749032 | Uninduced | 0.769 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.274 |
| SRR8400027 | Control-Root | 0.065 |