Gene detail information of Glyur002700s00036108.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G02330.13.00E-96Plant invertase/pectin methylesterase inhibitor superfamily
NRKEH24401.11.04E-139pectinesterase/pectinesterase inhibitor, putative [Medicago truncatula]
COGYP_006407803.12.00E-36pectin methylesterase [Belliella baltica DSM 15883]
Swissprottr|Q8RXK7|PME41_ARATH6.00E-116Pectinesterase 41 (Precursor)
trEMBLtr|A0A072U4Y4|A0A072U4Y4_MEDTR4.00E-140Pectinesterase {ECO:0000256|RuleBase:RU000589}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold027003190932697-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCE8


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01051E3.1.1.11 EC:3.1.1.11 Pentose and glucuronate interconversions map00040


Gene Ontology

biological_process

GO:0042545  cell wall modification


cellular_component

GO:0005618  cell wall


molecular_function

GO:0030599  pectinesterase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002700s00036108.1PF01095.14Pectinesterase462464.40E-97


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.341
SRR1783600control6.358
SRR1783602moderate drought stress5.679
SRR1811619moderate drought stress5.376

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.165
DRR006520Root Summer glycyrrhizin high producing strain16.677
DRR006521Root Winter glycyrrhizin high producing strain2.585
DRR006522Root Winter glycyrrhizin high producing strain1.871
DRR006523Root Summer glycyrrhizin low producing strain13.468
DRR006524Root Summer glycyrrhizin low producing strain12.820
DRR006525Leaf Summer glycyrrhizin high producing strain1.485
DRR006526Leaf Summer glycyrrhizin high producing strain1.451

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.851
SRR2868004Drought Stress(Tissue:root)8.649
SRR2967015Control (Tissue:root)31.618

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave24.936
SRR9715740Leave4.654
SRR9715741Leave19.015
SRR9715739Root55.385
SRR9715742Root60.724
SRR9715743Root55.422

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h665.522
SRR8749028MeJA induced 9h410.931
SRR8749029MeJA induced 9h407.224
SRR8749030Uninduced97.830
SRR8749031Uninduced9.390
SRR8749032Uninduced45.919

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.883
SRR8400027Control-Root8.731

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved