Gene detail

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Gene detail information of Glyur002703s00039087.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G28480.1	3.00E-61	Oxoglutarate/iron-dependent oxygenase
NR	XP_007151176.1	2.51E-85	hypothetical protein PHAVU_004G024300g [Phaseolus vulgaris]
COG	YP_004753320.1	1.00E-16	peptidyl prolyl 4-hydroxylase-like protein subunit alpha [Collimonas fungivorans Ter331]
Swissprot	tr\|Q8L970\|P4H7_ARATH	4.00E-73	Probable prolyl 4-hydroxylase 7 (Precursor)
trEMBL	tr\|V7C1M1\|V7C1M1_PHAVU	9.00E-86	Uncharacterized protein {ECO:0000313\|EMBL:ESW23170.1}

Sequence

Transcript Sequence

>Glyur002703s00039087.1
ATGAGGGTATGCAATGGAAGAGGGTCCTTTCTGAAGCTGAGGGTGTGCAGGCCGTGGCTCCAACGGTGGATGTATCACGACAACTCTCTTACGACAAGTGGTCGTAGCGAGGTCTTTGAGGGCCGTGGTGCTTCCACTGGGACGACTGAGTGGCACCCGCCACATCAAGTCAAAGGATATATTGAGCTGCAACATAGTGTTCATTACAGTAGCATAGAGAATGGAGAACCTATTCAGATGTTACGCTATGAGCATGGCCAGAAGTATGAACGACATTTTGATTGCATCCATGATAAGGGTAATCAAAAAGTGCCTGCCCAAAGAATTGCCACCGTGTTGATGTATTTATCCAATGTTGAGAAGGGTGGGGAAACCATTTTTCCCTTTTCTGAGGCAAGGTTGTCCCAGCCAAAGGATGAGAAGTGGTCAGAATGCGCTAAAAAAGGATATGCGGAGAATGGNGAACCTATTCAGATGTTACGCTATGAGCATGGCCAGAAGTATGAACGACATTTTGATTGCATCCATGATAAGGGTAATCAAAAAGTGCCTGCCCAAAGAATTGCCACCGTGTTGATGTATTTATCCAATGTTGAGAAGGGTGGGGAAACCATTTTNCCCTTTTCTGAGGCAAGGTTGTCCCAGCCAAAGGATGAGAAGTGGTCAGAATGCGCTAAAAAAGGATATGCGGTAAAACCTAATAAGGGTGATGCCGTGCTATTCTTCAGTCTTAATATACATGCAACTTTAGATCCTAACAGCTTGCATGGAAGCTGCCCTGTCATTGAAGGTGAAAAGTGGGATGCTGTTAAGTGGATTCACGCTAGAGACTTTGACAAACCAATCGAGCAAGATAGTGGGGCCTGTGTTGATGAGAATGAGAAATGCTCTATGTGGGCGAAAGTAGGTGCGTGTGAGAAGAGCACACTTTACATGGCTGGTAATGCNGAAGTCAAAGGACACTGTATGAAGAGTTGCAATGTCTGCTCGTCCTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02703	17789	28509	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00472	P4HA	EC:1.14.11.2	Arginine and proline metabolism	map00330

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0005506 iron ion binding GO:0016491 oxidoreductase activity GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors GO:0031418 L-ascorbic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002703s00039087.1	PF13640.1	2OG-FeII_Oxy_3	158	272	2.60E-09
Glyur002703s00039087.1	PF01549.19	ShK	289	329	0.00086

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.000
SRR2868004	Drought Stress(Tissue:root)	0.000
SRR2967015	Control (Tissue:root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.000
SRR8400027	Control-Root	0.123