Gene detail information of Glyur002712s00037645.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G54810.25.00E-31Plant-specific GATA-type zinc finger transcription factor family protein
NRKEH30032.18.08E-124GATA type zinc finger transcription factor family protein [Medicago truncatula]
Swissprottr|Q6DBP8|GAT11_ARATH3.00E-46GATA transcription factor 11
trEMBLtr|A0A072UK09|A0A072UK09_MEDTR3.00E-124GATA type zinc finger transcription factor family protein {ECO:0000313|EMBL:KEH30032.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold027121105514146+


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0008270  zinc ion binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002712s00037645.1PF00320.22GATA2612943.70E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.333
SRR1783600control8.209
SRR1783602moderate drought stress10.939
SRR1811619moderate drought stress10.888

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.460
DRR006520Root Summer glycyrrhizin high producing strain15.466
DRR006521Root Winter glycyrrhizin high producing strain18.367
DRR006522Root Winter glycyrrhizin high producing strain17.209
DRR006523Root Summer glycyrrhizin low producing strain22.417
DRR006524Root Summer glycyrrhizin low producing strain22.112
DRR006525Leaf Summer glycyrrhizin high producing strain11.499
DRR006526Leaf Summer glycyrrhizin high producing strain11.365

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.555
SRR2868004Drought Stress(Tissue:root)8.845
SRR2967015Control (Tissue:root)14.766

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.805
SRR9715740Leave19.625
SRR9715741Leave11.207
SRR9715739Root2.653
SRR9715742Root5.689
SRR9715743Root4.292

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.160
SRR8749028MeJA induced 9h11.886
SRR8749029MeJA induced 9h7.839
SRR8749030Uninduced7.357
SRR8749031Uninduced4.883
SRR8749032Uninduced4.250

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.738
SRR8400027Control-Root7.843

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved