Gene detail

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Gene detail information of Glyur002712s00037647.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G28350.1	auxin response factor 10
NR	XP_004506012.1	PREDICTED: auxin response factor 10-like [Cicer arietinum]
Swissprot	tr\|Q653H7\|ARFR_ORYSJ	Auxin response factor 18
trEMBL	tr\|I1LR43\|I1LR43_SOYBN	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur002712s00037647.1
TTCCTGGGCTTCCCTTCCCTTNCCTTATTCCCAGTTCAATCAAGTCAAAACTCGTGATATTTTCTGACACAATAGCATGACACAACGTTAATTACTACTATCTTTATCACATCATCTTCACATCATATGATTATAATTATAAGCCAAAAATAAAATCACATTCTCATTCTTTTATTTATTTAATAGTTAAATACATAAATAAATATAATATTTGGCTGGCTGATGAGGACCTGGTTTGGTCGTTTGTTTTGTTCATAGGTTCCGGAGAGTGTCTGTGTTGGGGACAGAGAGAGAGTGANAGAGAGGTGGTTCCTTTTCTTTCATTGAGATCTGAAAGAAACCAAAATATAAGGAGAAGAAAACAAAATCAGGTGGGGAAAGGTGAGTGAAGTGTAAGTGTTTGCGTGATGGAGCTTGTTTACCCTGTAGGAAGAGTGATGAGGATTAACCAATTTGACTCGGATTTCCGGTTCCAGATTCTGCCTCTGGAATGAAAACTCATCAATCAAGCTCTNTTCTCTCATCTTTCAGATTCTGCGAAAAGCCTTTTCCTTTCTATTGAGTAAAATAGAAGAAAAACCAACTGAAAAGCANTCAGCAGCACGTTTCAGAGGAGCTAGCAGAACTGCAAAGGGAGGAACGTGAGTTTCTCTGGTTTCTAAAATAGGGTGCGCTAAAGTTTGAAACTGTGCAAGTAAGAAAAAACAAACACATATCAATGAAGGAAGGTGAGAAGGGGTTGGATCCGCAACTATGGCACGCGTGTGCAGGTGGCATGGTTCAGATGNCGGCAGTAAACTCCAAAGTGTTTTACTTTCCTCAAGGACACGCGGAACACGCCAACACCACGGTTGATTTGAGGGTTTCGCCACTCATTCTTTGCAAAGTTGTGACAGTGAAATTCATGGCAGACCCAGAAACTGATGAAGTCTTCGCCAAAATAAGGCTCCTTCCACTAAGAAATTCCGAGTATGATGAAGAAAATGGTGAACTATCCGAAAGTGCAGAAAAGCCTGCATCTTTTGCCAAGACTTTGACACAATCGGATGCAAACAATGGTGGAGGGTTCTCAGTTCCGAGATACTGCGCCGAAACCATCTTCCCGCGACTTGATTACACGGCGGAGCCGCCAGTTCAGACGGTGGTGGCGAAGGACGTCCACGGCGAGCTTTGGAAGTTCAGGCATATCTACAGGGGGACACCACGTCGGCACTTGCTCACCACGGGGTGGAGCACTTTCGTGAACCAGAAGAAGCTGGTTGCAGGGGACTCTGTGGTGTTTCTCAGGGCTGAGAATGGGGACTTGTGTATCGGGATTCGCAGGGCGAAGAAGGGAATAGGTGGTGGCTCTGAGGCCTCATCTGGGTGGACTTCAGCTTCGGTCTCAGGAACTGGGAATTGCGGTATTGGGAATGGACCTTATGGGGCATTCTCATTTTTCATGAGAGAGGAGAACAAGCCATTGCGGAATGGATGTGTTGGTGTTGGTAATTTGAGTGGAAGAGCTGCAAGACTGAGGCCTGAAGCTGTTATGGAAGCAGTGACACTGGCTGCTAACAACCAGCCATTTGAAGTTGTTTACTACCCGAGAGCCAGCACTCCTGAGTTCTGCATTAAGGCTTCGTCTGTGAGGGCTGCTATGAGGATTCAATGGTGCTCTGGGATGAGGTTCAAGATGGCCTTTGAAACTGAGGACTCTTCCAGGATCAGCTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTGTTGATCCTATTCGCTGGCCCAATTCCCCCTGGCGCCTTCTCCAGGTTACATGGGATGAGCCAGATTTGCTACAGAATGTGAAGCGTGTTAGCCCGTGGTTGGTTGAATTGGTATCAAACATGCCAGTCATCCATTTCACACCCTTCTCTCCACCAAGGAAGAAGCTGCGGTTCCCCCTTGATGTTCAGTTTCCAACACCAGCAACGTTTTCAGGCAACCAGCTTGGGCCTAACAACAGCCCCTTGTTTGGTTTATCTGATAATAATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGAATATCTCTTTCAGATCTCAACCTTAGCAGCAATAAACTGCAGCTGGGGTTGTTTCCAACCAATATCCACCAGCATCATAATGGGGTTTCAAATGGCAACATGACCAACCATGATAAGAACAGGGAAAGCTTATCATGCTTGTTGACCATAGGGAAATCTGATAAGAGTTTGGAGAAATCTGATGATGTTAATAAGAAACACCAGTTTTGCCTTTTTGGTCAACCAATACTCACTGAGCAACAAATATCTAGAAACTGTTCTAGAGATGTGTTGGCTCATAAGGACAAAGAGAAGTGCTTTTTGGATGACTCCTCCCAATGTGCACTTTCAAAGCAGTTTTCACCAGGGAAAGCTTGTNCTGCTGCTGAGTTTTCTTGGCATCAACTTGGGTTGGATACCGGTCATTGCAAGGTGTTCTTGGAATCAGAAGATGTTGGAAGGACCCTAGAGCTATCAAGTCTTGGCTCTTATGAAGAGCTCTACAGGAGACTGGCCAACATGTTTGGCTTAGAAAGATCTGAGTTGTTGAACCATGTGTTCTACGGTGATGCAACAGGTGCTGTAAAGCAAACTGGTGAAGAACCCTTCAGTGACTTCAGGAAGACAGCAAAAAGATTGACAATTCTGACGGATTCAGGCAGCAAAAATGTCAGAAGGTAAGAGAGAAAATAAGCTCAGTCTTGTTACACGTTTTTCTTCGTCTGTGTAAATTTACTAATCAAGTTTGGTTTACCGTTACAAACATATATTTAGCCAAGAATTACGTTTGCAAAATGAGTATAAACCTTGCTTTTCGGTTCATTTTGCATGGGAACGCCAACAGATTTCCAACGGAAATCCAATCCAAACACACACTATAGGTTAGACATGTCTTCTTGGATAAGGATCATATCATCATAGTTTAGATGATGACCAAGCAGAAGAGGGAACTAAACCTTCTTTTTTTTTTGTTATTAAGAAGGAATGCTAATAAAATATCTTTGATAAATCAAAAGTAGGTCACAATTGTGCATAGAATCACCAATTCTTGTTTCTTCATTATCCTATTTTTATGAGGAGTCCCTTTTTTGGAATTGTCCCAAAATTATTTTGTGTAACCTTACGTTCGAATGTGTTTTGCAGGGCCTGGATTACAGGGACACGCAACAGTGAACATGGGTTGGATGCATCAAATAAAACGGGTCCTCTCGATCTGAGCATATTTGCTTAATGTGGTGTAACATCTAAGACATCGTTGTGATATGAGATGTTGAAGTGTAGAAATAAATAAATGACCTTCTTTTAGATATTTTACCTCTGGAAAGAGTGAATGTGGACAAAATNTTTTATCGAGGTTACTGTGATAATTAATGTTTGAAGGTGTAGAAATAATAATGATGGTGACCATTATTGTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02712	30658	34951	+

Gene family

Gene family	subfamily
Transcription Factors Family	ARF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009725 response to hormone

cellular_component GO:0005634 nucleus molecular_function GO:0003677 DNA binding GO:0046983 protein dimerization activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002712s00037647.1	PF02362.16	B3	102	203	1.10E-20
Glyur002712s00037647.1	PF06507.8	Auxin_resp	274	357	5.30E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.152
SRR1783600	control	9.355
SRR1783602	moderate drought stress	8.698
SRR1811619	moderate drought stress	8.631

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.374
DRR006520	Root Summer glycyrrhizin high producing strain	13.007
DRR006521	Root Winter glycyrrhizin high producing strain	10.394
DRR006522	Root Winter glycyrrhizin high producing strain	10.133
DRR006523	Root Summer glycyrrhizin low producing strain	33.766
DRR006524	Root Summer glycyrrhizin low producing strain	33.718
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.377
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.439

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	4.021
SRR2868004	Drought Stress(Tissue:root)	3.857
SRR2967015	Control (Tissue:root)	3.953

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.049
SRR9715740	Leave	3.722
SRR9715741	Leave	3.442
SRR9715739	Root	1.509
SRR9715742	Root	5.168
SRR9715743	Root	4.326

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	66.363
SRR8749028	MeJA induced 9h	33.477
SRR8749029	MeJA induced 9h	50.706
SRR8749030	Uninduced	6.097
SRR8749031	Uninduced	3.709
SRR8749032	Uninduced	4.152

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	4.473
SRR8400027	Control-Root	4.742