Gene detail information of Glyur002724s00044774.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55440.1 | 3.00E-06 | triosephosphate isomerase |
| NR | XP_006593480.1 | 5.75E-22 | PREDICTED: triosephosphate isomerase isoform X1 [Glycine max] |
| Swissprot | tr|P48495|TPIS_PETHY | 1.00E-19 | Triosephosphate isomerase, cytosolic |
| trEMBL | tr|K7M3E5|K7M3E5_SOYBN | 1.00E-22 | Triosephosphate isomerase {ECO:0000256|RuleBase:RU000517} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02724 | 12365 | 15497 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.936 |
| SRR1783600 | control | 3.813 |
| SRR1783602 | moderate drought stress | 1.664 |
| SRR1811619 | moderate drought stress | 1.916 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.024 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.802 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.294 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.006 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.257 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.215 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.505 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.851 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.073 |
| SRR2967015 | Control (Tissue:root) | 8.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.022 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.134 |
| SRR8749028 | MeJA induced 9h | 8.522 |
| SRR8749029 | MeJA induced 9h | 2.227 |
| SRR8749030 | Uninduced | 2.617 |
| SRR8749031 | Uninduced | 0.897 |
| SRR8749032 | Uninduced | 0.764 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.019 |
| SRR8400027 | Control-Root | 0.817 |