Gene detail information of Glyur002749s00036994.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06240.1 | 3.00E-16 | F-box family protein |
| NR | XP_004509851.1 | 4.52E-124 | PREDICTED: putative F-box protein At3g16210-like [Cicer arietinum] |
| Swissprot | tr|Q8GXC7|FBK50_ARATH | 3.00E-17 | F-box/kelch-repeat protein At3g06240 |
| trEMBL | tr|G7LFI2|G7LFI2_MEDTR | 5.00E-117 | F-box protein interaction domain protein {ECO:0000313|EMBL:AET03161.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02749 | 20753 | 24343 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.359 |
| SRR1783600 | control | 0.357 |
| SRR1783602 | moderate drought stress | 0.971 |
| SRR1811619 | moderate drought stress | 0.962 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.284 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.454 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.650 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.612 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.447 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.713 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.231 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.017 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.078 |
| SRR2967015 | Control (Tissue:root) | 1.868 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.604 |
| SRR9715740 | Leave | 2.743 |
| SRR9715741 | Leave | 1.848 |
| SRR9715739 | Root | 0.917 |
| SRR9715742 | Root | 0.197 |
| SRR9715743 | Root | 0.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.701 |
| SRR8749028 | MeJA induced 9h | 2.012 |
| SRR8749029 | MeJA induced 9h | 1.328 |
| SRR8749030 | Uninduced | 1.886 |
| SRR8749031 | Uninduced | 4.141 |
| SRR8749032 | Uninduced | 3.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.251 |
| SRR8400027 | Control-Root | 1.166 |