Gene detail

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Gene detail information of Glyur002754s00042782.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68810.1	6.00E-68	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NR	ACN21650.1	1.04E-142	putative basic helix-loop-helix protein BHLH25 [Lotus japonicus]
Swissprot	tr\|Q9S7Y1\|BH030_ARATH	3.00E-103	Transcription factor bHLH30
trEMBL	tr\|C0JP31\|C0JP31_LOTJA	4.00E-143	Putative basic helix-loop-helix protein BHLH25 {ECO:0000313\|EMBL:ACN21650.1}

Sequence

Transcript Sequence

>Glyur002754s00042782.1
GCTACATGGAATGATATAGATAAAGTTAAAGCCGTAAGAAGAAAGGAAAGTGGGAATAGCAGTACNCAAAGAGGCTCTATATATTTTAGAGGGTGAAGGCTGAAGAGTGCAGAGAGAAGAAGAAGAAAGCAAAAGAGCTAGCAAAAAAAAAACCAAAAAGACACCAACAAAAGCGTAAAGGAAAAGGAAAGCTCTATTGAAGGCAAAGGGNTCGAATAAAAAGGGTCATTACCTTACCCTTCCCACAAAGGTTATGGTGGCAGGAATAAGCCTACCAAGTGAAAGGGATATTTGAGATTGAGAGGCGCAAAGAGAGAAGAAGAAGATCCAAAGTTAGTGGCCTTTTCTTCAGCCACACCCAAACCACATGAGAGAATTAACAAGACAGAATTAGAAGACCATAAATCAGTCATCACTCACACGACAAAGGTTAAGAGAGTGAGTGAGATGAAAGAGGAACAAGATCAAGGGCAGTGTTCTAATTATNCTCAAGAAATCAACAACAACATTCAAAGCTATCATCAAGAGCAGCTACTNCTTCATCATCATCAGCAACAACAACAGATGCAGCAACAAAACAGTGATAACAACAACATCTTTGGAGGAGGATCATGGTCCATGCCTCATCCGGTTCACTCCTTCAACCCGGTTCATCCCATACCTTCAGTACAAGTAGTACCACCCTACGCGAGCTTTTTCAACAGGAGGGTTATTAATAATAATCCGTCGTCGTTTCAGTTTGCATCATACGAGGGTCTTCATGGAGTCTCTTCTTCTTCTGATCACCATCACCTGAGGATCATTTCTGATGCACTTGTTGGGCCCATGGTTCATCATCAGCCCGGCCCATATGGGCTGGNCCAAGCCGAGTTGGGGAAGATGAGTGCTCAAGAAATCATGGAGGCTAAGGCTCTTGCGGCTTCCAAGAGTCACAGTGAGGCTGAGAGGAGACGNAGAGAGAGAATCAATAACCATCTTGCCAAGTTGCGCAGCTTGTTGCCCAACACTACCAAAACAGATAAGGCATCGTTGCTGGCGGAAGTGATACAGCACGTGAAGGAACTGAAACGTCAAACGTCGTTAATAGCGGAGACGAGTGCAGTGCCAACGGAGTGTGACGAACTAACGGTGGATACGGCTGATGTTAATGAGGACGGAAAGTTCGTGATCAAGGCCTCGTTGTGCTGTGAAGACAGGTCAGATCTGTTACCCGATCTCATCAAGACACTGAAGGCGTTGAGGCTCAGAACACTCAGGGCTGAGATCGCCACGCTCNCCGGGCGCGTGAAGAACGTTCTCTTCATCACTTGCGACGACGACAACGGCAACGGCGACGAATCGAGTGGCAGTGGTGAGTATTGTAGTATTAGCTCAATACAAGAAGCGCTTAAGGCGGTGATGGAGAAAAGTGGGGACGATTCAGCTGCTTCTGGGAATGTTAAGCGCCAAAGGACTAATAATAATAATCTCAATAATAATAATAATATCCTTCAACAGAGGTCTTTATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold02754	30790	33696	+

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002754s00042782.1	PF00010.21	HLH	160	206	1.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.531
SRR1783600	control	0.498
SRR1783602	moderate drought stress	0.905
SRR1811619	moderate drought stress	0.881

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.800
DRR006520	Root Summer glycyrrhizin high producing strain	2.984
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.466
DRR006524	Root Summer glycyrrhizin low producing strain	2.481
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.245
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.246

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	5.215
SRR2868004	Drought Stress(Tissue:root)	5.974
SRR2967015	Control (Tissue:root)	5.597

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.611
SRR9715740	Leave	0.021
SRR9715741	Leave	0.213
SRR9715739	Root	0.033
SRR9715742	Root	0.544
SRR9715743	Root	0.471

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.487
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.188

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.682
SRR8400027	Control-Root	2.498