Gene detail information of Glyur002762s00040584.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G52360.12.00E-174Coatomer, beta' subunit
NRXP_004514667.10PREDICTED: leucine aminopeptidase 2, chloroplastic-like [Cicer arietinum]
COGYP_007124286.18.00E-57leucyl aminopeptidase [Microcoleus sp. PCC 7113]
Swissprottr|Q9C827|COB22_ARATH0Coatomer subunit beta'-2
trEMBLtr|A0A061GBE0|A0A061GBE0_THECC0Coatomer, beta' subunit isoform 4 {ECO:0000313|EMBL:EOY26698.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold02762253724364+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01255CARP, pepA EC:3.4.11.1 Glutathione metabolism map00480


Gene Ontology

biological_process

GO:0006508  proteolysis

GO:0019538  protein metabolic process


cellular_component

GO:0005622  intracellular

GO:0005737  cytoplasm


molecular_function

GO:0004177  aminopeptidase activity

GO:0008235  metalloexopeptidase activity

GO:0030145  manganese ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002762s00040584.2PF02789.12Peptidase_M17_N1012371.20E-22
Glyur002762s00040584.2PF00883.16Peptidase_M172734435.60E-66


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control42.771
SRR1783600control41.696
SRR1783602moderate drought stress47.229
SRR1811619moderate drought stress46.576

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain59.282
DRR006520Root Summer glycyrrhizin high producing strain58.169
DRR006521Root Winter glycyrrhizin high producing strain27.416
DRR006522Root Winter glycyrrhizin high producing strain27.192
DRR006523Root Summer glycyrrhizin low producing strain53.633
DRR006524Root Summer glycyrrhizin low producing strain52.475
DRR006525Leaf Summer glycyrrhizin high producing strain43.156
DRR006526Leaf Summer glycyrrhizin high producing strain42.972

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)48.256
SRR2868004Drought Stress(Tissue:root)40.373
SRR2967015Control (Tissue:root)48.031

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.277
SRR9715740Leave17.660
SRR9715741Leave18.235
SRR9715739Root54.319
SRR9715742Root48.389
SRR9715743Root48.915

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h30.103
SRR8749028MeJA induced 9h56.548
SRR8749029MeJA induced 9h17.693
SRR8749030Uninduced11.580
SRR8749031Uninduced6.574
SRR8749032Uninduced7.698

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root62.507
SRR8400027Control-Root62.763

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved