Gene detail information of Glyur002769s00032165.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G47720.40Thiolase family protein
NRXP_003637597.10Acetyl-CoA acetyltransferase cytosolic [Medicago truncatula]
COGYP_006419299.12.00E-157acetyl-CoA acetyltransferase [Aequorivita sublithincola DSM 14238]
Swissprottr|Q9FIK7|THIC2_ARATH0Probable acetyl-CoA acetyltransferase, cytosolic 2
trEMBLtr|G7ZZU7|G7ZZU7_MEDTR0Peroxisomal acetoacetyl-coenzyme A thiolase {ECO:0000313|EMBL:KEH32694.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold027691928223896+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00626E2.3.1.9, atoB EC:2.3.1.9 Carbon metabolism map01200
Fatty acid metabolismmap01212
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Propanoate metabolismmap00640
Butanoate metabolismmap00650
Carbon fixation pathways in prokaryotesmap00720
Fatty acid degradationmap00071
Synthesis and degradation of ketone bodiesmap00072
Valine, leucine and isoleucine degradationmap00280
Lysine degradationmap00310
Tryptophan metabolismmap00380
Terpenoid backbone biosynthesismap00900
Benzoate degradationmap00362
Two-component systemmap02020


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002769s00032165.1PF00108.18Thiolase_N252875.50E-92
Glyur002769s00032165.1PF02803.13Thiolase_C2954151.10E-44


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.437
SRR1783600control15.561
SRR1783602moderate drought stress21.027
SRR1811619moderate drought stress21.026

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain31.271
DRR006520Root Summer glycyrrhizin high producing strain30.777
DRR006521Root Winter glycyrrhizin high producing strain54.510
DRR006522Root Winter glycyrrhizin high producing strain53.146
DRR006523Root Summer glycyrrhizin low producing strain34.584
DRR006524Root Summer glycyrrhizin low producing strain35.218
DRR006525Leaf Summer glycyrrhizin high producing strain16.249
DRR006526Leaf Summer glycyrrhizin high producing strain16.224

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)28.589
SRR2868004Drought Stress(Tissue:root)31.989
SRR2967015Control (Tissue:root)29.853

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.515
SRR9715740Leave21.064
SRR9715741Leave26.691
SRR9715739Root8.120
SRR9715742Root17.168
SRR9715743Root15.243

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.864
SRR8749028MeJA induced 9h27.155
SRR8749029MeJA induced 9h26.196
SRR8749030Uninduced50.552
SRR8749031Uninduced40.261
SRR8749032Uninduced46.090

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.810
SRR8400027Control-Root24.512

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved