Gene detail information of Glyur002772s00034591.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G49720.1 | 9.00E-103 | glycosyl hydrolase 9A1 |
| NR | XP_004502591.1 | 0 | PREDICTED: endoglucanase 25-like [Cicer arietinum] |
| COG | YP_290232.1 | 2.00E-47 | endoglucanase [Thermobifida fusca YX] |
| Swissprot | tr|Q38890|GUN25_ARATH | 9.00E-124 | Endoglucanase 25 |
| trEMBL | tr|G7J672|G7J672_MEDTR | 0 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02772 | 11218 | 14044 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01179 | E3.2.1.4 | EC:3.2.1.4 | Starch and sucrose metabolism | map00500 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002772s00034591.1 | PF00759.14 | Glyco_hydro_9 | 115 | 588 | 3.90E-104 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.041 |
| SRR1783600 | control | 0.040 |
| SRR1783602 | moderate drought stress | 0.008 |
| SRR1811619 | moderate drought stress | 0.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.059 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.058 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.060 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.059 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.116 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.269 |
| SRR2967015 | Control (Tissue:root) | 0.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.073 |
| SRR9715740 | Leave | 0.033 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.135 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.088 |
| SRR8749028 | MeJA induced 9h | 0.139 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.086 |
| SRR8400027 | Control-Root | 0.140 |