Gene detail information of Glyur002778s00034250.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80670.1 | 0 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_004496188.1 | 0 | PREDICTED: rae1-like protein At1g80670-like [Cicer arietinum] |
| COG | YP_001658838.1 | 6.00E-20 | WD repeat-containing protein [Microcystis aeruginosa NIES-843] |
| Swissprot | tr|Q38942|RAE1_ARATH | 0 | Protein RAE1 {ECO:0000303|PubMed:21189294} |
| trEMBL | tr|I1JEL5|I1JEL5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G13780.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02778 | 6129 | 17080 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002778s00034250.1 | PF00400.27 | WD40 | 23 | 50 | 3.60E-05 |
| Glyur002778s00034250.1 | PF00400.27 | WD40 | 67 | 96 | 0.00016 |
| Glyur002778s00034250.1 | PF00400.27 | WD40 | 110 | 139 | 2.40E-09 |
| Glyur002778s00034250.1 | PF00400.27 | WD40 | 244 | 271 | 0.01 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.732 |
| SRR1783600 | control | 7.684 |
| SRR1783602 | moderate drought stress | 11.759 |
| SRR1811619 | moderate drought stress | 12.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.616 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.068 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.707 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.613 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.055 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.124 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.594 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.997 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.464 |
| SRR2967015 | Control (Tissue:root) | 17.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.788 |
| SRR9715740 | Leave | 10.699 |
| SRR9715741 | Leave | 10.043 |
| SRR9715739 | Root | 4.426 |
| SRR9715742 | Root | 8.043 |
| SRR9715743 | Root | 7.491 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.855 |
| SRR8749028 | MeJA induced 9h | 14.765 |
| SRR8749029 | MeJA induced 9h | 12.357 |
| SRR8749030 | Uninduced | 19.301 |
| SRR8749031 | Uninduced | 10.910 |
| SRR8749032 | Uninduced | 14.647 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.361 |
| SRR8400027 | Control-Root | 14.921 |