Gene detail information of Glyur002778s00034252.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G18040.11.00E-175cyclin-dependent kinase D1;3
NRAAK97227.10CDK-activating kinase [Medicago sativa subsp. x varia]
COGYP_006813211.12.00E-23serine/threonine kinase protein [Nocardia brasiliensis ATCC 700358]
Swissprottr|P29620|CDKD1_ORYSJ0Cyclin-dependent kinase D-1
trEMBLtr|Q947K6|Q947K6_MEDSV0CDK-activating kinase {ECO:0000313|EMBL:AAK97227.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold027781938131783-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.5.2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02202CDK7 EC:2.7.11.22 2.7.11.23 Basal transcription factors map03022
Nucleotide excision repairmap03420
Cell cyclemap04110


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002778s00034252.1PF00069.20Pkinase1534314.80E-69


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.922
SRR1783600control9.140
SRR1783602moderate drought stress8.110
SRR1811619moderate drought stress7.712

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.722
DRR006520Root Summer glycyrrhizin high producing strain14.280
DRR006521Root Winter glycyrrhizin high producing strain15.566
DRR006522Root Winter glycyrrhizin high producing strain14.712
DRR006523Root Summer glycyrrhizin low producing strain14.318
DRR006524Root Summer glycyrrhizin low producing strain14.736
DRR006525Leaf Summer glycyrrhizin high producing strain7.587
DRR006526Leaf Summer glycyrrhizin high producing strain7.305

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.330
SRR2868004Drought Stress(Tissue:root)15.979
SRR2967015Control (Tissue:root)15.406

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.933
SRR9715740Leave12.922
SRR9715741Leave14.811
SRR9715739Root2.857
SRR9715742Root12.919
SRR9715743Root10.979

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.176
SRR8749028MeJA induced 9h13.832
SRR8749029MeJA induced 9h9.228
SRR8749030Uninduced7.906
SRR8749031Uninduced5.637
SRR8749032Uninduced4.638

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.954
SRR8400027Control-Root17.030

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved