Gene detail information of Glyur002788s00039072.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01720.1 | 0 | |
| NR | XP_004488944.1 | 0 | PREDICTED: uncharacterized protein LOC101494949 isoform X1 [Cicer arietinum] |
| trEMBL | tr|A0A072TIQ7|A0A072TIQ7_MEDTR | 0 | Peptidyl serine alpha-galactosyltransferase {ECO:0000313|EMBL:KEH17101.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02788 | 7053 | 19839 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K20781 | SGT1 | EC:2.4.1.- | Other types of O-glycan biosynthesis | map00514 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.624 |
| SRR1783600 | control | 10.499 |
| SRR1783602 | moderate drought stress | 7.018 |
| SRR1811619 | moderate drought stress | 7.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.895 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.764 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.644 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.558 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.749 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.709 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.320 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.396 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 25.163 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.771 |
| SRR2967015 | Control (Tissue:root) | 21.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.715 |
| SRR9715740 | Leave | 4.629 |
| SRR9715741 | Leave | 6.206 |
| SRR9715739 | Root | 2.301 |
| SRR9715742 | Root | 7.486 |
| SRR9715743 | Root | 6.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.461 |
| SRR8749028 | MeJA induced 9h | 11.074 |
| SRR8749029 | MeJA induced 9h | 8.218 |
| SRR8749030 | Uninduced | 4.569 |
| SRR8749031 | Uninduced | 2.348 |
| SRR8749032 | Uninduced | 1.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.067 |
| SRR8400027 | Control-Root | 19.093 |