Gene detail information of Glyur002795s00038392.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G17160.14.00E-104pfkB-like carbohydrate kinase family protein
NRXP_003638398.10Ribokinase [Medicago truncatula]
COGYP_720744.14.00E-44ribokinase [Trichodesmium erythraeum IMS101]
Swissprottr|Q9LNE3|SCRK2_ARATH7.00E-11Probable fructokinase-2
trEMBLtr|G8A248|G8A248_MEDTR0Ribokinase {ECO:0000313|EMBL:AES85536.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold027951709720976+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00852rbsK, RBKS EC:2.7.1.15 Pentose phosphate pathway map00030


Gene Ontology

biological_process

GO:0006014  D-ribose metabolic process


molecular_function

GO:0004747  ribokinase activity

GO:0016773  phosphotransferase activity, alcohol group as acceptor


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002795s00038392.1PF00294.19PfkB643391.10E-54


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.355
SRR1783600control16.119
SRR1783602moderate drought stress27.960
SRR1811619moderate drought stress28.012

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.736
DRR006520Root Summer glycyrrhizin high producing strain20.809
DRR006521Root Winter glycyrrhizin high producing strain12.696
DRR006522Root Winter glycyrrhizin high producing strain10.815
DRR006523Root Summer glycyrrhizin low producing strain15.359
DRR006524Root Summer glycyrrhizin low producing strain15.239
DRR006525Leaf Summer glycyrrhizin high producing strain9.646
DRR006526Leaf Summer glycyrrhizin high producing strain9.299

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.967
SRR2868004Drought Stress(Tissue:root)10.313
SRR2967015Control (Tissue:root)11.847

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.905
SRR9715740Leave5.240
SRR9715741Leave4.815
SRR9715739Root8.684
SRR9715742Root12.763
SRR9715743Root10.944

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.967
SRR8749028MeJA induced 9h8.550
SRR8749029MeJA induced 9h5.876
SRR8749030Uninduced2.508
SRR8749031Uninduced1.273
SRR8749032Uninduced2.153

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.275
SRR8400027Control-Root20.801

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved