Gene detail information of Glyur002811s00042777.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G37150.4 | 3.00E-09 | holocarboxylase synthetase 2 |
| NR | XP_004500594.1 | 5.99E-12 | PREDICTED: biotin--protein ligase-like [Cicer arietinum] |
| Swissprot | tr|F4I4W2|HCS2_ARATH | 3.00E-10 | Biotin--protein ligase 2 |
| trEMBL | tr|V7AYN8|V7AYN8_PHAVU | 5.00E-12 | Uncharacterized protein {ECO:0000313|EMBL:ESW09361.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02811 | 7694 | 13423 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01784 | galE, GALE | EC:5.1.3.2 | Galactose metabolism | map00052 |
| Amino sugar and nucleotide sugar metabolism | map00520 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 4.633 |
| SRR1811619 | moderate drought stress | 4.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.781 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.796 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.931 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.537 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.310 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.641 |
| SRR9715740 | Leave | 4.745 |
| SRR9715741 | Leave | 4.952 |
| SRR9715739 | Root | 2.340 |
| SRR9715742 | Root | 4.053 |
| SRR9715743 | Root | 3.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.266 |
| SRR8400027 | Control-Root | 11.335 |